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This orthogroup contains 205 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 205 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10701 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| Pfam | PF01423 | LSM | 170 / 205 | 82.9% | 100.0% of 170 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0005682 Cellular Component | U5 snRNP | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0005687 Cellular Component | U4 snRNP | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 175 / 205 | 85.4% | 100.0% of 175 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 170 / 205 | 82.9% | 97.1% of 175 | ≥80% support |
| KEGG | K11086 | SNRPB, SMB — DNA replication proteins | 156 / 205 | 76.1% | 97.5% of 160 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptogorgia sarmentosa | ENSAPQP00000006682.1 | XP_028410053.1 | small nuclear ribonucleoprotein-associated protein B-like [Dendronephthya gigantea] | Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B' OS=Not | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000006690.1 | XP_046843362.1 | LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B-like [Xenia sp. Carnegie-2017] | Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B' OS=Not | JBrowse |
| Leptogorgia sarmentosa | ENSAPQP00000006698.1 | XP_046843362.1 | LOW QUALITY PROTEIN: small nuclear ribonucleoprotein-associated protein B-like [Xenia sp. Carnegie-2017] | Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B' OS=Not | JBrowse |
