← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 2,234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01410 | COLFI — Fibrillar collagen C-terminal domain | 1918 / 2,234 | 85.9% | 94.4% of 2,032 | ≥80% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 1932 / 2,234 | 86.5% | 96.1% of 2,010 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 1668 / 2,234 | 74.7% | 94.7% of 1,762 | ≥50% support |
| Pfam | PF01391 | Collagen | 1660 / 2,234 | 74.3% | 81.7% of 2,032 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 1669 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 1668 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN01894-RA | KAJ7369672.1 | hypothetical protein OS493_037259 [Desmophyllum pertusum] | Q9JI03 Collagen alpha-1(V) chain OS=Rattus norvegicus OX=10116 GN=C | JBrowse |
| Leptoseris scabra | ANN13547-RA | KAJ7370530.1 | Collagen alpha-2(I) chain [Desmophyllum pertusum] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Leptoseris scabra | ANN13552-RA | XP_020632456.1 | collagen alpha-1(II) chain-like [Orbicella faveolata] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Leptoseris scabra | ANN13555-RA | XP_020632453.1 | collagen alpha-1(II) chain-like, partial [Orbicella faveolata] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
