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This orthogroup contains 624 genes from 149 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 624 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12131 | ATP-DEPENDENT RNA AND DNA HELICASE | 532 / 624 | 85.3% | 99.1% of 537 | ≥80% support |
| GO | GO:0003724 Molecular Function | RNA helicase activity | 532 / 624 | 85.3% | 99.1% of 537 | ≥80% support |
| GO | GO:0006401 Biological Process | RNA catabolic process | 532 / 624 | 85.3% | 99.1% of 537 | ≥80% support |
| Pfam | PF08148 | DSHCT | 426 / 624 | 68.3% | 77.0% of 553 | ≥50% support |
| Pfam | PF00270 | DEAD | 409 / 624 | 65.5% | 74.0% of 553 | ≥50% support |
| Pfam | PF13234 | MTR4_beta-barrel — Mtr4-like, beta-barrel domain | 408 / 624 | 65.4% | 73.8% of 553 | ≥50% support |
| Pfam | PF21408 | MTR4-like_stalk — Exosome RNA helicase MTR4-like, stalk | 398 / 624 | 63.8% | 72.0% of 553 | ≥50% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 378 / 624 | 60.6% | 68.4% of 553 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 411 / 624 | 65.9% | 76.5% of 537 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 410 / 624 | 65.7% | 76.4% of 537 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 344 / 624 | 55.1% | 64.1% of 537 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN02848-RA | CAH3021505.1 | unnamed protein product [Porites evermanni] | Q15477 Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKI | JBrowse |
| Leptoseris scabra | ANN02849-RA | XP_020612277.1 | helicase SKI2W-like, partial [Orbicella faveolata] | Q6NZR5 Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Sk | JBrowse |
| Leptoseris scabra | ANN29929-RA | CAH3188801.1 | unnamed protein product [Porites lobata] | Q9CZU3 Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex | JBrowse |
