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This orthogroup contains 313 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 313 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR18937 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER | 272 / 313 | 86.9% | 98.2% of 277 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 273 / 313 | 87.2% | 98.9% of 276 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 272 / 313 | 86.9% | 98.6% of 276 | ≥80% support |
| GO | GO:0007062 Biological Process | sister chromatid cohesion | 271 / 313 | 86.6% | 98.2% of 276 | ≥80% support |
| GO | GO:0008278 Cellular Component | cohesin complex | 271 / 313 | 86.6% | 98.2% of 276 | ≥80% support |
| Pfam | PF02463 | SMC_N — RecF/RecN/SMC N terminal domain | 237 / 313 | 75.7% | 94.1% of 252 | ≥50% support |
| Pfam | PF06470 | SMC_hinge — SMC proteins Flexible Hinge Domain | 191 / 313 | 61.0% | 75.8% of 252 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 220 / 313 | 70.3% | 79.7% of 276 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 201 / 313 | 64.2% | 72.8% of 276 | ≥50% support |
| GO | GO:0005694 Cellular Component | chromosome | 199 / 313 | 63.6% | 72.1% of 276 | ≥50% support |
| GO | GO:0051276 Biological Process | chromosome organization | 199 / 313 | 63.6% | 72.1% of 276 | ≥50% support |
| GO | GO:0016887 Molecular Function | ATP hydrolysis activity | 189 / 313 | 60.4% | 68.5% of 276 | ≥50% support |
| KEGG | K06636 | SMC1 — Chromosome and associated proteins | 172 / 313 | 55.0% | 93.0% of 185 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Leptoseris scabra | ANN23587-RA | XP_022785746.1 | structural maintenance of chromosomes protein 1A-like [Stylophora pistillata] | O93308 Structural maintenance of chromosomes protein 1A OS=Xenopus | JBrowse |
| Leptoseris scabra | ANN23592-RA | XP_020611608.1 | structural maintenance of chromosomes protein 1A-like isoform X1 [Orbicella faveolata] | O97593 Structural maintenance of chromosomes protein 1A OS=Bos taur | JBrowse |
