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This orthogroup contains 327 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 327 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13952 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | 283 / 327 | 86.5% | 99.3% of 285 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 275 / 327 | 84.1% | 99.6% of 276 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 283 / 327 | 86.5% | 98.6% of 287 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 283 / 327 | 86.5% | 98.6% of 287 | ≥80% support |
| GO | GO:0017069 Molecular Function | snRNA binding | 283 / 327 | 86.5% | 98.6% of 287 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 283 / 327 | 86.5% | 98.6% of 287 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 280 / 327 | 85.6% | 97.6% of 287 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 276 / 327 | 84.4% | 96.2% of 287 | ≥80% support |
| GO | GO:0005689 Cellular Component | U12-type spliceosomal complex | 206 / 327 | 63.0% | 71.8% of 287 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G162380 | CAB3980981.1 | U11 U12 small nuclear ribonucleo 35 kDa [Paramuricea clavata] | Q05AT9 U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xe | JBrowse |
| Paragorgia papillata | Ppa0G296200 | CAB3995516.1 | peptidyl-prolyl cis-trans isomerase-like 4 [Paramuricea clavata] | Q8WUA2 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens O | JBrowse |
