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This orthogroup contains 165 genes from 136 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 165 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10270 | SOX TRANSCRIPTION FACTOR | 154 / 165 | 93.3% | 100.0% of 154 | ≥80% support |
| Pfam | PF00505 | HMG_box — HMG (high mobility group) box | 154 / 165 | 93.3% | 100.0% of 154 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 144 / 165 | 87.3% | 100.0% of 144 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 144 / 165 | 87.3% | 100.0% of 144 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 144 / 165 | 87.3% | 100.0% of 144 | ≥80% support |
| GO | GO:0009653 Biological Process | anatomical structure morphogenesis | 144 / 165 | 87.3% | 100.0% of 144 | ≥80% support |
| GO | GO:0030154 Biological Process | cell differentiation | 144 / 165 | 87.3% | 100.0% of 144 | ≥80% support |
| KEGG | K09270 | SOX7S — Transcription factors | 127 / 165 | 77.0% | 98.5% of 129 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Paragorgia papillata | Ppa0G363630 | XP_046845656.1 | transcription factor Sox-19b-like [Xenia sp. Carnegie-2017] | P43680 Transcription factor SOX-18 OS=Mus musculus OX=10090 GN=Sox1 | JBrowse |
| Paragorgia papillata | Ppa0G363680 | CAB4005523.1 | Hypothetical predicted protein [Paramuricea clavata] | Q9Y651 Transcription factor SOX-21 OS=Homo sapiens OX=9606 GN=SOX21 | JBrowse |
