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Support counts the member genes carrying the term. % of genes is that count over all 56 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF04542 | Sigma70_r2 — Sigma-70 region 2 | 47 / 56 | 83.9% | 87.0% of 54 | ≥80% support |
| Pfam | PF08281 | Sigma70_r4_2 — Sigma-70, region 4 | 46 / 56 | 82.1% | 85.2% of 54 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 51 / 56 | 91.1% | 96.2% of 53 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 51 / 56 | 91.1% | 96.2% of 53 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 51 / 56 | 91.1% | 96.2% of 53 | ≥80% support |
| GO | GO:0016987 Molecular Function | sigma factor activity | 51 / 56 | 91.1% | 96.2% of 53 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 48 / 56 | 85.7% | 90.6% of 53 | ≥80% support |
| PANTHER | PTHR43133 | RNA POLYMERASE ECF-TYPE SIGMA FACTO | 40 / 56 | 71.4% | 75.5% of 53 | ≥50% support |
| KEGG | K03088 | rpoE — Transcription machinery | 34 / 56 | 60.7% | 91.9% of 37 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Aurelia aurita complex sp. Pacific | scaffold10.g194.t1 | none | – | JBrowse | |
| Cassiopea xamachana | Cxam_g10916.t1 | MCI0461412.1 | sigma-70 family RNA polymerase sigma factor [Gemmataceae bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g11938.t1 | WP_075092539.1 | sigma-70 family RNA polymerase sigma factor [Planctomyces sp. SH-PL14] | Q06198 RNA polymerase sigma-H factor OS=Pseudomonas aeruginosa (str | JBrowse |
| Cassiopea xamachana | Cxam_g13009.t1 | MBN2491662.1 | RNA polymerase sigma factor [Planctomycetota bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g16936.t1 | MBN2491560.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g16998.t1 | MBN2489716.1 | RNA polymerase sigma factor [Planctomycetota bacterium] | Q06198 RNA polymerase sigma-H factor OS=Pseudomonas aeruginosa (str | JBrowse |
| Cassiopea xamachana | Cxam_g17290.t1 | MBN2491847.1 | RNA polymerase sigma factor [Planctomycetota bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g17292.t1 | MBN2491845.1 | RNA polymerase sigma factor [Planctomycetota bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g17499.t1 | NQT16307.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P44790 ECF RNA polymerase sigma-E factor OS=Haemophilus influenzae | JBrowse |
| Cassiopea xamachana | Cxam_g17848.t1 | MBN2491738.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | Q06198 RNA polymerase sigma-H factor OS=Pseudomonas aeruginosa (str | JBrowse |
| Cassiopea xamachana | Cxam_g18107.t1 | MBN2492214.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | Q06198 RNA polymerase sigma-H factor OS=Pseudomonas aeruginosa (str | JBrowse |
| Cassiopea xamachana | Cxam_g19309.t1 | WP_229051697.1 | RNA polymerase sigma factor SigE [Aeromicrobium sp. Leaf350] | H8F0N6 ECF RNA polymerase sigma factor SigE OS=Mycobacterium tuberc | JBrowse |
| Cassiopea xamachana | Cxam_g198.t1 | WP_170401109.1 | sigma-70 family RNA polymerase sigma factor [Ruegeria arenilitoris] | Q3IYV6 ECF RNA polymerase sigma factor RpoE OS=Cereibacter sphaeroi | JBrowse |
| Cassiopea xamachana | Cxam_g22174.t1 | MBN2491320.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | Q06198 RNA polymerase sigma-H factor OS=Pseudomonas aeruginosa (str | JBrowse |
| Cassiopea xamachana | Cxam_g3236.t1 | MCA8943255.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | – | JBrowse |
| Cassiopea xamachana | Cxam_g3379.t1 | WP_170405400.1 | RNA polymerase sigma factor [Ruegeria arenilitoris] | – | JBrowse |
| Cassiopea xamachana | Cxam_g3397.t1 | WP_170405564.1 | RNA polymerase sigma factor [Ruegeria arenilitoris] | H8F0N6 ECF RNA polymerase sigma factor SigE OS=Mycobacterium tuberc | JBrowse |
| Cassiopea xamachana | Cxam_g5808.t1 | MBN2492017.1 | RNA polymerase sigma factor [Planctomycetota bacterium] | A0R2D4 ECF RNA polymerase sigma factor SigE OS=Mycolicibacterium sm | JBrowse |
| Cassiopea xamachana | Cxam_g6519.t1 | MBN2490816.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P0AGB8 ECF RNA polymerase sigma-E factor OS=Escherichia coli O157:H | JBrowse |
| Cassiopea xamachana | Cxam_g6598.t1 | PIE25676.1 | MAG: hypothetical protein CSA62_00355 [Planctomycetota bacterium] | – | JBrowse |
