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Support counts the member genes carrying the term. % of genes is that count over all 26 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR30308 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX | 22 / 26 | 84.6% | 88.0% of 25 | ≥80% support |
| Pfam | PF01668 | SmpB | 25 / 26 | 96.2% | 100.0% of 25 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 25 / 26 | 96.2% | 100.0% of 25 | ≥80% support |
| GO | GO:0005829 Cellular Component | cytosol | 24 / 26 | 92.3% | 96.0% of 25 | ≥80% support |
| GO | GO:0070930 Biological Process | trans-translation-dependent protein tagging | 22 / 26 | 84.6% | 88.0% of 25 | ≥80% support |
| KEGG | K03664 | smpB — Protein processing | 14 / 26 | 53.9% | 87.5% of 16 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Calvadosia cruxmelitensis | g806.t1 | XP_047144285.1 | ankyrin repeat and fibronectin type-III domain-containing protein 1 isoform X3 [Hydra vulgaris] | Q8N957 Ankyrin repeat and fibronectin type-III domain-containing pr | JBrowse |
| Cassiopea xamachana | Cxam_g10152.t1 | MBN2490116.1 | SsrA-binding protein SmpB [Planctomycetota bacterium] | B7KF17 SsrA-binding protein OS=Gloeothece citriformis (strain PCC 7 | JBrowse |
| Cassiopea xamachana | Cxam_g293.t1 | WP_170326303.1 | SsrA-binding protein SmpB [Ruegeria arenilitoris] | Q1GDQ2 SsrA-binding protein OS=Ruegeria sp. (strain TM1040) OX=2924 | JBrowse |
| Hydra oligactis | HOLI00001.G52142 | WP_009404278.1 | MULTISPECIES: SsrA-binding protein SmpB [Pseudomonas] | B0KIT1 SsrA-binding protein OS=Pseudomonas putida (strain GB-1) OX= | JBrowse |
| Hydra oligactis | HOLI00002.G19326 | MBL7934514.1 | SsrA-binding protein SmpB [Bacteroidia bacterium] | Q11TP3 SsrA-binding protein OS=Cytophaga hutchinsonii (strain ATCC | JBrowse |
| Hydra oligactis | HOLI00522.G17133 | WP_031568421.1 | SsrA-binding protein SmpB [Pararheinheimera texasensis] | Q47XH8 SsrA-binding protein OS=Colwellia psychrerythraea (strain 34 | JBrowse |
| Hydra oligactis | HOLI00655.G57017 | WP_105262807.1 | SsrA-binding protein SmpB [Rhodoferax sp. TS-BS-61-7] | Q21VE0 SsrA-binding protein OS=Albidiferax ferrireducens (strain AT | JBrowse |
| Hydra oligactis | HOLI02195.G14024 | WP_094290857.1 | MULTISPECIES: SsrA-binding protein SmpB [Acidovorax] | A1WPQ3 SsrA-binding protein OS=Verminephrobacter eiseniae (strain E | JBrowse |
| Hydra viridissima | BRAKERKREP00000023488.1 | WP_043542823.1 | SsrA-binding protein SmpB [Achromobacter sp. RTa] | Q7WJ73 SsrA-binding protein OS=Bordetella bronchiseptica (strain AT | JBrowse |
| Hydra viridissima | g20792.t1.1 | none | – | JBrowse | |
| Leptoseris scabra | ANN34992-RA | WP_163649691.1 | SsrA-binding protein SmpB [Modicisalibacter sp. 'Wilcox'] | A1U622 SsrA-binding protein OS=Marinobacter nauticus (strain ATCC 7 | JBrowse |
| Montipora grisea | ANN21552-RA | MYK18753.1 | SsrA-binding protein SmpB [Candidatus Poribacteria bacterium] | A3DJ18 SsrA-binding protein OS=Acetivibrio thermocellus (strain ATC | JBrowse |
| Montipora grisea | ANN21929-RA | RKU21951.1 | SsrA-binding protein [Candidatus Poribacteria bacterium] | Q3AFC2 SsrA-binding protein OS=Carboxydothermus hydrogenoformans (s | JBrowse |
| Montipora grisea | ANN22182-RA | MYA69868.1 | SsrA-binding protein SmpB [Candidatus Poribacteria bacterium] | Q67SL8 SsrA-binding protein OS=Symbiobacterium thermophilum (strain | JBrowse |
| Montipora grisea | ANN22573-RA | MCE2402285.1 | SsrA-binding protein SmpB [Candidatus Poribacteria bacterium] | Q67SL8 SsrA-binding protein OS=Symbiobacterium thermophilum (strain | JBrowse |
| Montipora grisea | ANN23741-RA | MCE2432473.1 | SsrA-binding protein SmpB [Candidatus Latescibacteria bacterium] | A4ISN8 SsrA-binding protein OS=Geobacillus thermodenitrificans (str | JBrowse |
| Montipora grisea | ANN24428-RA | MCL5436415.1 | SsrA-binding protein SmpB [Candidatus Dependentiae bacterium] | P59630 SsrA-binding protein OS=Enterococcus faecalis (strain ATCC 7 | JBrowse |
| Montipora grisea | ANN27706-RA | MBT5097744.1 | SsrA-binding protein SmpB [Pseudomonadota bacterium] | A1WX40 SsrA-binding protein OS=Halorhodospira halophila (strain DSM | JBrowse |
| Montipora grisea | ANN30430-RA | WP_014949307.1 | MULTISPECIES: SsrA-binding protein SmpB [Alteromonas] | B4RXY7 SsrA-binding protein OS=Alteromonas mediterranea (strain DSM | JBrowse |
| Montipora grisea | ANN31202-RA | RKU21951.1 | SsrA-binding protein [Candidatus Poribacteria bacterium] | A3DJ18 SsrA-binding protein OS=Acetivibrio thermocellus (strain ATC | JBrowse |
