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Support counts the member genes carrying the term. % of genes is that count over all 5 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF03466 | LysR_substrate — LysR substrate binding domain | 5 / 5 | 100.0% | 100.0% of 5 | 100% consensus |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5 / 5 | 100.0% | 100.0% of 5 | 100% consensus |
| PANTHER | PTHR30126 | HTH-TYPE TRANSCRIPTIONAL REGULATOR | 4 / 5 | 80.0% | 80.0% of 5 | ≥80% support |
| Pfam | PF00126 | HTH_1 — Bacterial regulatory helix-turn-helix protein, lysR family | 4 / 5 | 80.0% | 80.0% of 5 | ≥80% support |
| GO | GO:0000976 Molecular Function | transcription cis-regulatory region binding | 4 / 5 | 80.0% | 80.0% of 5 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 4 / 5 | 80.0% | 80.0% of 5 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g628.t1 | WP_170769081.1 | LysR family transcriptional regulator [Ruegeria lacuscaerulensis] | P0A9G0 HTH-type transcriptional regulator MetR OS=Escherichia coli | JBrowse |
| Eunicella verrucosa | ENSNOVP00005037172.1 | KZM44359.1 | hypothetical protein OA92_06765 [Marinomonas sp. SBI22] | O34827 Uncharacterized HTH-type transcriptional regulator YkuM OS=B | JBrowse |
| Hydra oligactis | HOLI00001.G51661 | WP_213085819.1 | MULTISPECIES: transcriptional regulator MetR [Pseudomonas] | P0A9G0 HTH-type transcriptional regulator MetR OS=Escherichia coli | JBrowse |
| Hydra oligactis | HOLI00580.G30070 | MBT9514400.1 | LysR family transcriptional regulator [Acidovorax sp.] | P0DUU5 HTH-type transcriptional regulator AceR OS=Acinetobacter bau | JBrowse |
| Trachythela sp. YZ-2020 | Clavulariidae_g13256 | none | – | JBrowse |
