Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ18523.1 EDIAP_KXJ18523.1 1 1 3.5 537 0.000323625 hypothetical protein AC249_AIPGENE1576 [Exaiptasia diaphana]
KXJ18563.1 EDIAP_KXJ18563.1 1 1 1.6 938 0.000231884 Homeobox protein engrailed-2b [Exaiptasia diaphana]
KXJ18753.1 EDIAP_KXJ18753.1 1 1 6 350 0.00401828 hypothetical protein AC249_AIPGENE13393 [Exaiptasia diaphana]
KXJ18813.1 EDIAP_KXJ18813.1 1 1 2.7 597 0.000231884 BTB/POZ domain-containing protein KCTD6 [Exaiptasia diaphana]
KXJ18918.1 EDIAP_KXJ18918.1 1 1 4.3 325 0.00246096 RIMS-binding protein 2 [Exaiptasia diaphana]
KXJ19042.1 EDIAP_KXJ19042.1 1 1 3.5 482 0.000121477 Platelet-activating factor acetylhydrolase 2, cytoplasmic [Exaiptasia diaphana]
KXJ19068.1 EDIAP_KXJ19068.1 1 1 1.1 1006 0.00833565 Sodium- and chloride-dependent GABA transporter 2 [Exaiptasia diaphana]
KXJ19094.1 EDIAP_KXJ19094.1 1 1 5 564 0.00359125 Microtubule-associated proteins 1A/1B light chain 3C [Exaiptasia diaphana]
KXJ19187.1 EDIAP_KXJ19187.1 1 1 4.6 563 0.00129318 hypothetical protein AC249_AIPGENE5080 [Exaiptasia diaphana]
KXJ19211.1 EDIAP_KXJ19211.1 1 1 3.2 308 0.00719839 Transportin-1 [Exaiptasia diaphana]
KXJ19573.1 EDIAP_KXJ19573.1 1 1 3 1123 0.00298235 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 [Exaiptasia diaphana]
KXJ19688.1 EDIAP_KXJ19688.1 1 1 0.8 1652 0.00283239 putative adhesion G protein-coupled receptor E4P, partial [Exaiptasia diaphana]
KXJ19692.1 EDIAP_KXJ19692.1 1 1 3.9 308 0.00223637 Uncharacterized protein C9orf117-like [Exaiptasia diaphana]
KXJ19782.1 EDIAP_KXJ19782.1 1 1 0.9 1463 0.00246096 Espin [Exaiptasia diaphana]
KXJ19840.1 EDIAP_KXJ19840.1 1 1 8.7 150 0.00136761 Axin interactor, dorsalization-associated protein [Exaiptasia diaphana]
KXJ19855.1 EDIAP_KXJ19855.1 1 1 3.7 802 0.00586576 Polycystic kidney disease protein 1-like 2 [Exaiptasia diaphana]
KXJ20020.1 EDIAP_KXJ20020.1 1 1 3 508 0.00609085 Hemicentin-2 [Exaiptasia diaphana]
KXJ20321.1 EDIAP_KXJ20321.1 1 1 2.3 795 0.000121477 Tripartite motif-containing protein 45 [Exaiptasia diaphana]
KXJ20495.1 EDIAP_KXJ20495.1 1 1 2.9 384 0.00262601 Small G protein signaling modulator 3 [Exaiptasia diaphana]
KXJ20625.1 EDIAP_KXJ20625.1 1 1 1.9 800 0.000522685 hypothetical protein AC249_AIPGENE906 [Exaiptasia diaphana]
KXJ20719.1 EDIAP_KXJ20719.1 1 1 6.4 266 0.00122353 Caspase-7 [Exaiptasia diaphana]
KXJ20934.1 EDIAP_KXJ20934.1 1 1 2.1 560 0.00862128 Arginine kinase [Exaiptasia diaphana]
KXJ21285.1 EDIAP_KXJ21285.1 1 1 1.6 682 0.00581699 Ubiquitin carboxyl-terminal hydrolase 38 [Exaiptasia diaphana]
KXJ21473.1 EDIAP_KXJ21473.1 1 1 14 207 0.000121477 WD repeat-containing protein 76 [Exaiptasia diaphana]
KXJ21588.1 EDIAP_KXJ21588.1 1 1 8.3 218 0.00351709 Protein-glutamine gamma-glutamyltransferase K [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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