Species Overview — Kudoa sp. trachurus

CnidoSite currently holds 1 of the 15 data types it covers for Kudoa sp. trachurus. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

— not available

RNA-seq samples with expression values (TPM)

Open Transcriptome anyway →

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

— not available

Trait measurements with geo-referencing

Open Phenotype anyway →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Open Mitogenome anyway →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
jmKudSpea1.1
Assembly level
Contig
Assembly accession
GCA_964275015.1
Assembled by
WELLCOME SANGER INSTITUTE
Year
2024

Genome statistics

Genome size
33.73 Mb
GC content
26%
Scaffolds
71
Scaffold N50
2.83 Mb
Contigs
71
Contig N50
2.83 Mb

Annotation

BUSCO
Complete, single-copy 9.7%Complete, duplicated 0.2%Fragmented 2.1%Missing 88.0%

Identifiers

WGS accession
CAXXCD01
BioProject
PRJEB80899

Other Myxozoa species

Henneguya salminicolaMyxobolus honghuensisMyxobolus squamalisThelohanellus kitaueiCeratomyxa sp. 57-BR2022Ceratomyxa sp. 58-BR2022Ceratonova shastaEllipsomyxa sp. 115-BR2022Ellipsomyxa sp. 70-BR2022Kudoa iwataiKudoa neothunniKudoa sp. trachurusMyxobolus sp. r MT-2024Myxosporea sp. 108-BR2022Sphaeromyxa zaharoniSphaerospora molnariEnteromyxum leei
See all Myxozoa species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-22 22:18). If a data type is listed as unavailable for Kudoa sp. trachurus, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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