Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 12 gene–annotation pairs matching PF00309 across 148 genomes · 42 ms.

Species with hits:Hydra oligactis 4Montipora grisea 4Aurelia aurita complex sp. Pacific 1Cassiopea xamachana 1Hydra viridissima 1Stylophora pistillata 1
SpeciesGene IDPfam termMatchSourceBrowser
Aurelia aurita complex sp. Pacificscaffold10.g236.t1PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Cassiopea xamachanaCxam_g21802.t1PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Hydra oligactisHOLI00002.G21194PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Hydra oligactisHOLI00002.G21575PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Hydra oligactisHOLI00299.G46669PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Hydra oligactisHOLI00001.G53813PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Hydra viridissimaBRAKERKREP00000023266.1PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Montipora griseaANN32484-RAPF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Montipora griseaANN27982-RAPF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Montipora griseaANN21015-RAPF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Montipora griseaANN24529-RAPF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse
Stylophora pistillataPFX11360.1PF00309Sigma-54 factor, Activator interacting domain (AID) InterproscanJBrowse

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