Functional Domain Search

Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterPro Pfam KEGG pathway Gene Ontology PANTHER

Examples: IPR016024 PF12848 K13752 homeobox · matching is exact on the identifier and partial on the description.

Found 8 gene–annotation pairs matching PF16658 across 148 genomes · 6005 ms.

Species with hits:HOLIG 2 MGRIS 2 AAURI2 1 ASP1 1 CXAMA 1 HVIRI 1

Species	Gene ID	Pfam term	Match	Source	Browser
AAURI2	scaffold10.g149.t1	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
ASP1	Acti_006288-T1	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
CXAMA	Cxam_g1479.t1	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
HOLIG	HOLI00059.G25584	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
HOLIG	HOLI01087.G37574	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
HVIRI	BRAKERKREP00000023271.1	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
MGRIS	ANN34914-RA	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse
MGRIS	ANN35508-RA	PF16658	Class II release factor RF3, C-terminal domain	Interproscan	JBrowse