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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydractinia symbiolongicarpus | HSymV2.0_g03.05203_t1 | AAX58756.1 | homeodomain protein Msx [Podocoryna carnea] | Q09604 Homeobox protein vab-15 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.08486_t1 | ACM62736.1 | Mox homeodomain transcription factor protein [Clytia hemisphaerica] | P32442 Homeobox protein MOX-1 OS=Mus musculus OX=10090 GN=Meox1 PE= | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.08706_t1 | ACM62730.1 | Antp family homeodomain transcription factor protein HD01 [Clytia hemisphaerica] | – | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.08898_t1 | NXS93649.1 | HMX1 protein [Jacana jacana] | Q504H8 Homeobox protein HMX3 OS=Danio rerio OX=7955 GN=hmx3 PE=2 SV | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.08975_t1 | AAK63185.1 | transcription factor Cnox4-Pc [Podocoryna carnea] | P31247 Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.09230_t1 | XP_012566941.2 | homeobox protein mab-5-like [Hydra vulgaris] | P09080 Homeobox protein HB1 (Fragment) OS=Tripneustes gratilla OX=7 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g05.09419_t1 | XP_046189585.1 | homeobox protein HMX2-like [Oncorhynchus gorbuscha] | Q0P4W6 Homeobox protein HMX3 OS=Xenopus tropicalis OX=8364 GN=hmx3 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g07.11774_t1 | XP_009030513.1 | hypothetical protein HELRODRAFT_135991, partial [Helobdella robusta] | A5YC49 Homeobox protein Nkx-6.3 OS=Xenopus laevis OX=8355 GN=nkx6-3 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g08.13083_t1 | ABE68631.1 | Cnox-4 [Eleutheria dichotoma] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g08.13534_t1 | ACM62733.1 | Hox9-14A homeodomain transcription factor protein [Clytia hemisphaerica] | P06798 Homeobox protein Hox-A4 OS=Mus musculus OX=10090 GN=Hoxa4 PE | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g08.13578_t1 | ABC00746.1 | Cnox-2 [Hydractinia symbiolongicarpus] | Q8AWZ2 Homeobox protein Hox-A3a OS=Danio rerio OX=7955 GN=hoxa3a PE | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g09.14914_t1 | CAA72534.1 | Cn-ems protein [Hydractinia symbiolongicarpus] | Q04743 Homeobox protein EMX2 OS=Homo sapiens OX=9606 GN=EMX2 PE=1 S | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g10.17581_t1 | CAB88387.1 | homeoprotein [Hydra vulgaris] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g10.18429_t1 | AAD34033.1 | MAB-5 [Pristionchus pacificus] | P10038 Homeobox protein mab-5 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g10.19123_t1 | CAB88387.1 | homeoprotein [Hydra vulgaris] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g12.20907_t1 | XP_002165751.1 | homeobox protein ceh-9 [Hydra vulgaris] | Q28ET4 Homeobox protein vent1 OS=Xenopus tropicalis OX=8364 GN=vent | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g13.22737_t1 | KAI4461413.1 | homeobox protein nkx [Holotrichia oblita] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g15.25150_t1 | NWI64625.1 | HMX1 protein [Todus mexicanus] | Q8JJ64 Homeobox protein HMX3 OS=Xenopus laevis OX=8355 GN=hmx3 PE=1 | JBrowse |
