Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 17 gene–annotation pairs matching IPR038709 across 148 genomes · 44 ms.

Species with hits:Hydra oligactis 6Montipora grisea 6Aurelia aurita complex sp. Pacific 1Cassiopea xamachana 1Hydractinia symbiolongicarpus 1Hydra viridissima 1Stylophora pistillata 1
SpeciesGene IDInterPro termMatchSourceBrowser
Aurelia aurita complex sp. Pacificscaffold10.g236.t1IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Cassiopea xamachanaCxam_g21802.t1IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI00002.G21194IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI00002.G21575IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI00014.G9417IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI00299.G46669IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI00001.G53813IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra oligactisHOLI05983.G36106IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02060_t1IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000023266.1IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN32484-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN39354-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN27982-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN21015-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN24529-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Montipora griseaANN27609-RAIPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse
Stylophora pistillataPFX11360.1IPR038709RNA polymerase sigma-54 factor, core-binding domain superfamilyInterproscanJBrowse

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