Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 21 gene–annotation pairs matching PF01043 across 148 genomes · 6349 ms.

Species with hits:HOLIG 5CXAMA 2HECHI 2HVIRI 2AAURI2 1ASP1 1BCFM 1CCRUX 1LSCAB 1MGRIS 1MPAPU 1MVIRU 1PMIZI 1TRUBR 1
SpeciesGene IDPfam termMatchSourceBrowser
AAURI2scaffold272.g32.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
ASP1Acti_006295-T1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
BCFMM_g30451.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
CCRUXg286.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
CXAMACxam_g28464.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
CXAMACxam_g22689.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HECHIENSDJXP00000049483.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HECHIENSDJXP00000049488.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HOLIGHOLI00014.G10637PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HOLIGHOLI00002.G20800PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HOLIGHOLI01811.G46106PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HOLIGHOLI00001.G51832PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HOLIGHOLI00592.G59065PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HVIRIBRAKERKREP00000023631.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
HVIRIBRAKERKREP00000027182.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
LSCABANN35256-RAPF01043SecA preprotein cross-linking domainInterproscanJBrowse
MGRISANN27550-RAPF01043SecA preprotein cross-linking domainInterproscanJBrowse
MPAPUBRAKERKYLP00000026533.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
MVIRUscaffold121.g267.t1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
PMIZIc2486.g005.t1.p1PF01043SecA preprotein cross-linking domainInterproscanJBrowse
TRUBRBRAKERIOWP00000004354.1PF01043SecA preprotein cross-linking domainInterproscanJBrowse

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