Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 9 gene–annotation pairs matching PF03135 across 148 genomes · 47 ms.

Species with hits:Cassiopea xamachana 3Hydractinia symbiolongicarpus 3Hydra oligactis 2Hydra viridissima 1
SpeciesGene IDPfam termMatchSourceBrowser
Cassiopea xamachanaCxam_g3972.t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Cassiopea xamachanaCxam_g10577.t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Cassiopea xamachanaCxam_g16139.t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydra oligactisHOLI03798.G33166PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydra oligactisHOLI00264.G3211PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02602_t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02296_t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02125_t1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000022776.1PF03135CagE, TrbE, VirB family, component of type IV transporter systemInterproscanJBrowse

TOP