Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 28 gene–annotation pairs matching PF03958 across 148 genomes · 5872 ms.

Species with hits:Hydra oligactis 9Cassiopea xamachana 7Actinernus sp. WN-2022 3Calvadosia cruxmelitensis 3Aurelia aurita complex sp. Pacific 2Morbakka virulenta 2Hydra viridissima 1Montipora grisea 1
SpeciesGene IDPfam termMatchSourceBrowser
Aurelia aurita complex sp. Pacificscaffold683.g5.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Aurelia aurita complex sp. Pacificscaffold1004.g11.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Actinernus sp. WN-2022Acti_006374-T1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Actinernus sp. WN-2022Acti_006374-T1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Actinernus sp. WN-2022Acti_006374-T1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Calvadosia cruxmelitensisg2035.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Calvadosia cruxmelitensisg2035.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Calvadosia cruxmelitensisg2035.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g16751.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g16751.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g16751.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g16751.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g16751.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g20526.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Cassiopea xamachanaCxam_g20526.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00059.G25656PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00059.G25656PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00059.G25656PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00014.G10587PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI02858.G48438PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00001.G52564PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00256.G40601PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00001.G50853PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra oligactisHOLI00001.G50310PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000022639.1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Montipora griseaANN24432-RAPF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Morbakka virulentascaffold121.g216.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse
Morbakka virulentascaffold121.g280.t1PF03958Bacterial type II/III secretion system short domainInterproscanJBrowse

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