Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 14 gene–annotation pairs matching PF04546 across 148 genomes · 8030 ms.

Species with hits:MGRIS 5HOLIG 3AAURI2 1CCRUX 1CXAMA 1HSYMB 1HVIRI 1LSCAB 1
SpeciesGene IDPfam termMatchSourceBrowser
AAURI2scaffold2648.g2.t1PF04546Sigma-70, non-essential regionInterproscanJBrowse
CCRUXg1015.t1PF04546Sigma-70, non-essential regionInterproscanJBrowse
CXAMACxam_g879.t1PF04546Sigma-70, non-essential regionInterproscanJBrowse
HOLIGHOLI00001.G52403PF04546Sigma-70, non-essential regionInterproscanJBrowse
HOLIGHOLI00150.G2065PF04546Sigma-70, non-essential regionInterproscanJBrowse
HOLIGHOLI02858.G48416PF04546Sigma-70, non-essential regionInterproscanJBrowse
HSYMBHSymV2.0_g02.02355_t1PF04546Sigma-70, non-essential regionInterproscanJBrowse
HVIRIBRAKERKREP00000022387.1PF04546Sigma-70, non-essential regionInterproscanJBrowse
LSCABANN35065-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse
MGRISANN20731-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse
MGRISANN32715-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse
MGRISANN25128-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse
MGRISANN40172-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse
MGRISANN39960-RAPF04546Sigma-70, non-essential regionInterproscanJBrowse

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