Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 17 gene–annotation pairs matching PF04963 across 148 genomes · 42 ms.

Species with hits:Hydra oligactis 6Montipora grisea 5Aurelia aurita complex sp. Pacific 1Cassiopea xamachana 1Hydractinia symbiolongicarpus 1Hydra viridissima 1Stylophora pistillata 1Turritopsis rubra 1
SpeciesGene IDPfam termMatchSourceBrowser
Aurelia aurita complex sp. Pacificscaffold10.g236.t1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Cassiopea xamachanaCxam_g21802.t1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI00002.G21194PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI00002.G21575PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI00014.G9417PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI00299.G46669PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI00001.G53813PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra oligactisHOLI05983.G36106PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02060_t1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000023266.1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Montipora griseaANN32484-RAPF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Montipora griseaANN39354-RAPF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Montipora griseaANN27982-RAPF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Montipora griseaANN21015-RAPF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Montipora griseaANN24529-RAPF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Stylophora pistillataPFX11360.1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse
Turritopsis rubraBRAKERIOWP00000011285.1PF04963Sigma-54 factor, core binding domainInterproscanJBrowse

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