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Support counts the member genes carrying the term. % of genes is that count over all 49 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR47964 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC | 41 / 49 | 83.7% | 89.1% of 46 | ≥80% support |
| Pfam | PF00270 | DEAD | 42 / 49 | 85.7% | 89.4% of 47 | ≥80% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 42 / 49 | 85.7% | 89.4% of 47 | ≥80% support |
| Pfam | PF02559 | CarD_TRCF_RID — CarD-like/TRCF RID domain | 42 / 49 | 85.7% | 89.4% of 47 | ≥80% support |
| GO | GO:0005524 Molecular Function | ATP binding | 45 / 49 | 91.8% | 95.7% of 47 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 42 / 49 | 85.7% | 89.4% of 47 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 42 / 49 | 85.7% | 89.4% of 47 | ≥80% support |
| GO | GO:0003678 Molecular Function | DNA helicase activity | 41 / 49 | 83.7% | 87.2% of 47 | ≥80% support |
| Pfam | PF03461 | TRCF | 38 / 49 | 77.6% | 80.9% of 47 | ≥50% support |
| Pfam | PF17757 | UvrB_inter — UvrB interaction domain | 38 / 49 | 77.6% | 80.9% of 47 | ≥50% support |
| GO | GO:0003684 Molecular Function | damaged DNA binding | 38 / 49 | 77.6% | 80.9% of 47 | ≥50% support |
| KEGG | K03723 | mfd — DNA repair and recombination proteins | 37 / 49 | 75.5% | 94.9% of 39 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Aurelia aurita complex sp. Pacific | scaffold2046.g3.t1 | none | – | JBrowse | |
| Calvadosia cruxmelitensis | g654.t1 | KAJ7383927.1 | DDB1- and CUL4-associated factor 6 [Desmophyllum pertusum] | Q5R9B8 DDB1- and CUL4-associated factor 6 OS=Pongo abelii OX=9601 G | JBrowse |
| Cassiopea xamachana | Cxam_g1438.t1 | WP_170328852.1 | transcription-repair coupling factor [Ruegeria arenilitoris] | Q1RI82 Transcription-repair-coupling factor OS=Rickettsia bellii (s | JBrowse |
| Cassiopea xamachana | Cxam_g19504.t1 | MCS6977729.1 | transcription-repair coupling factor [Gemmatales bacterium] | P37474 Transcription-repair-coupling factor OS=Bacillus subtilis (s | JBrowse |
| Exaiptasia diaphana | KXJ04317.1 | KXJ04317.1 | Transcription-repair-coupling factor, partial [Exaiptasia diaphana] | P37474 Transcription-repair-coupling factor OS=Bacillus subtilis (s | JBrowse |
| Hydra oligactis | HOLI00001.G51186 | WP_110972666.1 | transcription-repair coupling factor [Pseudomonas huaxiensis] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra oligactis | HOLI00002.G21567 | MCD6016958.1 | mfd [Bacteroidota bacterium] | P37474 Transcription-repair-coupling factor OS=Bacillus subtilis (s | JBrowse |
| Hydra oligactis | HOLI00150.G2405 | WP_105260819.1 | transcription-repair coupling factor [Rhodoferax sp. TS-BS-61-7] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra oligactis | HOLI00264.G3129 | RYF67368.1 | DEAD/DEAH box helicase, partial [Comamonadaceae bacterium] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra oligactis | HOLI00264.G3130 | RZI65455.1 | transcription-repair coupling factor, partial [Variovorax sp.] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra oligactis | HOLI00264.G3131 | RZJ59625.1 | MAG: transcription-repair coupling factor, partial [Acidovorax sp.] | P45128 Transcription-repair-coupling factor OS=Haemophilus influenz | JBrowse |
| Hydra oligactis | HOLI00299.G46613 | WP_208932099.1 | 3-hydroxybutyrate dehydrogenase [Rheinheimera sp. F8] | O86034 D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti ( | JBrowse |
| Hydra oligactis | HOLI00622.G31350 | TXH96402.1 | transcription-repair coupling factor [Rheinheimera sp.] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra oligactis | HOLI00622.G31351 | TXH96402.1 | transcription-repair coupling factor [Rheinheimera sp.] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g02.02047_t1 | MCF7913755.1 | ATP-dependent DNA helicase RecG [Spirochaetaceae bacterium] | O51528 ATP-dependent DNA helicase RecG OS=Borreliella burgdorferi ( | JBrowse |
| Hydractinia symbiolongicarpus | HSymV2.0_g02.02605_t1 | PIR39691.1 | transcription-repair coupling factor [Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_39_49] | Q4UMJ0 Transcription-repair-coupling factor OS=Rickettsia felis (st | JBrowse |
| Hydra viridissima | BRAKERKREP00000023193.1 | WP_004566410.1 | transcription-repair coupling factor [Bordetella bronchiseptica] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Hydra viridissima | g20394.t1.1 | none | – | JBrowse | |
| Montipora grisea | ANN20809-RA | WP_062150409.1 | transcription-repair coupling factor [Beggiatoa leptomitoformis] | P30958 Transcription-repair-coupling factor OS=Escherichia coli (st | JBrowse |
| Montipora grisea | ANN21227-RA | MCG8649268.1 | transcription-repair coupling factor [Pirellulales bacterium] | P37474 Transcription-repair-coupling factor OS=Bacillus subtilis (s | JBrowse |
