Species Overview — Catablema vesicarium

CnidoSite currently holds 2 of the 15 data types it covers for Catablema vesicarium. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

— not available

RNA-seq samples with expression values (TPM)

Open Transcriptome anyway →

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 9 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Open Mitogenome anyway →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
ASM3147132v1
Assembly level
Scaffold
Assembly accession
GCA_031471325.1
Assembled by
Iridian Genomes
Year
2023

Genome statistics

Genome size
340.50 Mb
GC content
33%
Scaffolds
214,304
Scaffold N50
2.4 kb
Contigs
221,694
Contig N50
2.2 kb

Annotation

BUSCO
Complete, single-copy 24.8%Complete, duplicated 0.4%Fragmented 25.4%Missing 49.5%

Identifiers

WGS accession
JAUELI01
BioProject
PRJNA894682

Reference

Reference
The Genome Sequences of 118 Taxonomically Diverse Eukaryotes of the Salish Sea Biodiversity Genomes [link]

Other Hydrozoa species

Bougainvillia cf. muscusCandelabrum cocksiiHydractinia echinataHydractinia symbiolongicarpusHydra oligactisHydra viridissimaHydra vulgarisMillepora alcicornisMillepora complanataMillepora dichotomaTurritopsis dohrniiTurritopsis rubraClytia hemisphaericaNanomia septataAegina citreaAequorea victoriaAglantha digitaleBougainvillia muscusBythotiara depressaCatablema vesicariumCladonema pacificumCladonema radiatumCraspedacusta sowerbiiEuphysa ruthaeEutonina indicansMitrocomella polydiademataNanomia bijugaNeoturris breviconisPhysalia physalisPtychogena californicaSarsia tubulosaScolionema suvaenseSertularella gayiStomotoca atraTiaropsis multicirrataEctopleura larynx
See all Hydrozoa species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 05:52). If a data type is listed as unavailable for Catablema vesicarium, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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