Species Overview — Physalia physalis

CnidoSite currently holds 4 of the 15 data types it covers for Physalia physalis. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

✓ 21 records

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 8 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

✓ 20 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
Physalia_TX2017-38_primary_02
Assembly level
Chromosome
Assembly accession
GCA_041430235.2
Assembled by
Yale University
Year
2025

Genome statistics

Genome size
3,173.31 Mb
GC content
31%
Scaffolds
2,434
Scaffold N50
233.28 Mb
Contigs
4,916
Contig N50
2.03 Mb
Chromosomes
10

Annotation

BUSCO
Complete 89.9%Not complete 10.1%
Protein-coding genes
24
Proteins
24

Identifiers

WGS accession
JAWZSJ02
BioProject
PRJNA1040906

Reference

Reference
Population genomics of a sailing siphonophore reveals genetic structure in the open ocean Current Biology [link]

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See all Hydrozoa species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 02:35). If a data type is listed as unavailable for Physalia physalis, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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