Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 36 gene–annotation pairs matching PF00140 across 148 genomes · 5771 ms.

Species with hits:MGRIS 13HOLIG 9CXAMA 4AAURI2 2CCRUX 2ASP1 1HIMPE 1HSYMB 1HVIRI 1LSCAB 1MVIRU 1
SpeciesGene IDPfam termMatchSourceBrowser
AAURI2scaffold10.g187.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
AAURI2scaffold228.g19.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
ASP1Acti_006273-T1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CCRUXg1015.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CCRUXg537.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CXAMACxam_g10693.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CXAMACxam_g16054.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CXAMACxam_g879.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
CXAMACxam_g966.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HIMPEevm.model.Contig129.25PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00002.G20008PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00001.G52403PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00001.G52590PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00353.G43124PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00002.G20773PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00150.G2065PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI02858.G48416PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00001.G54019PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HOLIGHOLI00150.G2249PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HSYMBHSymV2.0_g02.02355_t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
HVIRIBRAKERKREP00000022387.1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse
LSCABANN35065-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN35275-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN20731-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN22588-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN27083-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN41748-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN32715-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN30204-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN27508-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN25128-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN40172-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN39960-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN27053-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MGRISANN24719-RAPF00140Sigma-70 factor, region 1.2InterproscanJBrowse
MVIRUscaffold121.g266.t1PF00140Sigma-70 factor, region 1.2InterproscanJBrowse

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