Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 12 gene–annotation pairs matching PF02482 across 148 genomes · 33 ms.

Species with hits:Hydra oligactis 6Cassiopea xamachana 1Hydractinia symbiolongicarpus 1Hydra viridissima 1Montipora grisea 1Morbakka virulenta 1Palythoa mizigama 1
SpeciesGene IDPfam termMatchSourceBrowser
Cassiopea xamachanaCxam_g5530.t1PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI00002.G20341PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI00001.G53812PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI00014.G10105PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI00299.G46670PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI01051.G37024PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra oligactisHOLI00001.G53727PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02443_t1PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000022619.1PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Montipora griseaANN30269-RAPF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Morbakka virulentascaffold121.g348.t1PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse
Palythoa mizigamac2780.g012.t1.p1PF02482Sigma 54 modulation protein / S30EA ribosomal proteinInterproscanJBrowse

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