Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 18 gene–annotation pairs matching PF03979 across 148 genomes · 8574 ms.

Species with hits:MGRIS 4HOLIG 3CCRUX 2CXAMA 2HVIRI 2ASP1 1HIMPE 1HSYMB 1LSCAB 1MVIRU 1
SpeciesGene IDPfam termMatchSourceBrowser
ASP1Acti_006273-T1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
CCRUXg1015.t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
CCRUXg537.t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
CXAMACxam_g10693.t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
CXAMACxam_g879.t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HIMPEevm.model.Contig129.25PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HOLIGHOLI00001.G52403PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HOLIGHOLI00150.G2065PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HOLIGHOLI02858.G48416PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HSYMBHSymV2.0_g02.02355_t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HVIRIBRAKERKREP00000022387.1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
HVIRIg20573.t1.1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse
LSCABANN35065-RAPF03979Sigma-70 factor, region 1.1InterproscanJBrowse
MGRISANN20731-RAPF03979Sigma-70 factor, region 1.1InterproscanJBrowse
MGRISANN41748-RAPF03979Sigma-70 factor, region 1.1InterproscanJBrowse
MGRISANN32715-RAPF03979Sigma-70 factor, region 1.1InterproscanJBrowse
MGRISANN39960-RAPF03979Sigma-70 factor, region 1.1InterproscanJBrowse
MVIRUscaffold121.g266.t1PF03979Sigma-70 factor, region 1.1InterproscanJBrowse

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