← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 264 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11252 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | 243 / 264 | 92.1% | 99.6% of 244 | ≥80% support |
| Pfam | PF01138 | RNase_PH — 3' exoribonuclease family, domain 1 | 223 / 264 | 84.5% | 93.3% of 239 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 244 / 264 | 92.4% | 99.2% of 246 | ≥80% support |
| GO | GO:0004654 Molecular Function | polyribonucleotide nucleotidyltransferase activity | 243 / 264 | 92.1% | 98.8% of 246 | ≥80% support |
| GO | GO:0005829 Cellular Component | cytosol | 243 / 264 | 92.1% | 98.8% of 246 | ≥80% support |
| GO | GO:0000175 Molecular Function | 3'-5'-RNA exonuclease activity | 243 / 264 | 92.1% | 98.8% of 246 | ≥80% support |
| GO | GO:0006401 Biological Process | RNA catabolic process | 243 / 264 | 92.1% | 98.8% of 246 | ≥80% support |
| GO | GO:0006402 Biological Process | mRNA catabolic process | 243 / 264 | 92.1% | 98.8% of 246 | ≥80% support |
| Pfam | PF03725 | RNase_PH_C — 3' exoribonuclease family, domain 2 | 200 / 264 | 75.8% | 83.7% of 239 | ≥50% support |
| Pfam | PF03726 | PNPase — Polyribonucleotide nucleotidyltransferase, RNA binding domain | 165 / 264 | 62.5% | 69.0% of 239 | ≥50% support |
| Pfam | PF00575 | S1 | 141 / 264 | 53.4% | 59.0% of 239 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 189 / 264 | 71.6% | 76.8% of 246 | ≥50% support |
| GO | GO:0006396 Biological Process | RNA processing | 176 / 264 | 66.7% | 71.5% of 246 | ≥50% support |
| GO | GO:0005739 Cellular Component | mitochondrion | 173 / 264 | 65.5% | 70.3% of 246 | ≥50% support |
| GO | GO:0000965 Biological Process | mitochondrial RNA 3'-end processing | 172 / 264 | 65.2% | 69.9% of 246 | ≥50% support |
| GO | GO:0000958 Biological Process | mitochondrial mRNA catabolic process | 172 / 264 | 65.2% | 69.9% of 246 | ≥50% support |
| KEGG | K00962 | pnp, PNPT1 — Transfer RNA biogenesis | 171 / 264 | 64.8% | 97.7% of 175 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra oligactis | HOLI00001.G52118 | GEX25406.1 | ATP-dependent zinc metalloprotease FTSH, chloroplastic [Tanacetum cinerariifolium] | B1J2B3 Polyribonucleotide nucleotidyltransferase OS=Pseudomonas put | JBrowse |
| Hydra oligactis | HOLI00002.G19387 | MBL7937108.1 | polyribonucleotide nucleotidyltransferase [Bacteroidia bacterium] | Q5L7Z7 Polyribonucleotide nucleotidyltransferase OS=Bacteroides fra | JBrowse |
| Hydra oligactis | HOLI00150.G1840 | WP_105262396.1 | polyribonucleotide nucleotidyltransferase [Rhodoferax sp. TS-BS-61-7] | Q21YD1 Polyribonucleotide nucleotidyltransferase OS=Albidiferax fer | JBrowse |
| Hydra oligactis | HOLI00522.G17045 | WP_031568360.1 | polyribonucleotide nucleotidyltransferase [Pararheinheimera texasensis] | Q8EHL1 Polyribonucleotide nucleotidyltransferase OS=Shewanella onei | JBrowse |
| Hydra oligactis | HOLI00522.G17046 | TXH96351.1 | polyribonucleotide nucleotidyltransferase [Rheinheimera sp.] | A7MIN6 Polyribonucleotide nucleotidyltransferase OS=Cronobacter sak | JBrowse |
| Hydra oligactis | HOLI01423.G1433 | WP_056421010.1 | MULTISPECIES: polyribonucleotide nucleotidyltransferase [unclassified Acidovorax] | A1TLL2 Polyribonucleotide nucleotidyltransferase OS=Paracidovorax c | JBrowse |
| Hydra oligactis | HOLI01423.G1434 | MBW8462353.1 | polyribonucleotide nucleotidyltransferase [Acidovorax sp.] | B9MEL0 Polyribonucleotide nucleotidyltransferase OS=Acidovorax ebre | JBrowse |
| Hydra oligactis | HOLI01529.G35425 | MBI3887866.1 | polyribonucleotide nucleotidyltransferase [Candidatus Microgenomates bacterium] | A5GN19 Polyribonucleotide nucleotidyltransferase OS=Synechococcus s | JBrowse |
| Hydra oligactis | HOLI01529.G35426 | MBI3887866.1 | polyribonucleotide nucleotidyltransferase [Candidatus Microgenomates bacterium] | B8CW78 Polyribonucleotide nucleotidyltransferase OS=Halothermothrix | JBrowse |
| Hydra oligactis | HOLI01529.G35427 | MBI3887866.1 | polyribonucleotide nucleotidyltransferase [Candidatus Microgenomates bacterium] | A4XL64 Polyribonucleotide nucleotidyltransferase OS=Caldicellulosir | JBrowse |
