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Support counts the member genes carrying the term. % of genes is that count over all 189 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13742 | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:0051726 Biological Process | regulation of cell cycle | 162 / 189 | 85.7% | 100.0% of 162 | ≥80% support |
| GO | GO:0000785 Cellular Component | chromatin | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:0005667 Cellular Component | transcription regulator complex | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:0030154 Biological Process | cell differentiation | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| GO | GO:2000134 Biological Process | negative regulation of G1/S transition of mitotic cell cycle | 161 / 189 | 85.2% | 99.4% of 162 | ≥80% support |
| Pfam | PF01858 | RB_A — Retinoblastoma-associated protein A domain | 129 / 189 | 68.3% | 77.3% of 167 | ≥50% support |
| Pfam | PF01857 | RB_B — Retinoblastoma-associated protein B domain | 126 / 189 | 66.7% | 75.5% of 167 | ≥50% support |
| Pfam | PF11934 | DUF3452 | 118 / 189 | 62.4% | 70.7% of 167 | ≥50% support |
| Pfam | PF08934 | Rb_C — Rb C-terminal domain | 115 / 189 | 60.9% | 68.9% of 167 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 142 / 189 | 75.1% | 87.7% of 162 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0083.g50.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | D3ZS28 Retinoblastoma-like protein 1 OS=Rattus norvegicus OX=10116 | JBrowse |
| Acropora acuminata | aacu_s0083.g51.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | – | JBrowse |
| Acropora austera | ENSKKQP00000035560.1 | XP_015756649.1 | PREDICTED: retinoblastoma-associated protein-like isoform X2 [Acropora digitifera] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora austera | ENSKKQP00000035576.1 | XP_015756646.1 | PREDICTED: retinoblastoma-associated protein-like isoform X1 [Acropora digitifera] | Q90600 Retinoblastoma-associated protein OS=Gallus gallus OX=9031 G | JBrowse |
| Acropora austera | ENSKKQP00000035593.1 | XP_015756646.1 | PREDICTED: retinoblastoma-associated protein-like isoform X1 [Acropora digitifera] | Q90600 Retinoblastoma-associated protein OS=Gallus gallus OX=9031 G | JBrowse |
| Acropora awi | aawi_s0065.g66.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora cervicornis | KAK2573286.1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora cytherea | acyt_s0087.g44.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora digitifera | chr1Alt.g2379.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0002.g107.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora florida | aflo_s0137.g67.t1 | XP_015756646.1 | PREDICTED: retinoblastoma-associated protein-like isoform X1 [Acropora digitifera] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora florida | aflo_s0137.g68.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | – | JBrowse |
| Acropora gemmifera | agem_s0065.g72.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | – | JBrowse |
| Acropora gemmifera | agem_s0065.g73.t1 | XP_015756646.1 | PREDICTED: retinoblastoma-associated protein-like isoform X1 [Acropora digitifera] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora hemprichii | Ahemp_012957-T2 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora hyacinthus | ahya_s0001.g679.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora hyacinthus | ahya_s1664.g1.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | P06400 Retinoblastoma-associated protein OS=Homo sapiens OX=9606 GN | JBrowse |
| Acropora intermedia | aint_s0070.g69.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | D3ZS28 Retinoblastoma-like protein 1 OS=Rattus norvegicus OX=10116 | JBrowse |
| Acropora intermedia | aint_s0070.g69.t2 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | D3ZS28 Retinoblastoma-like protein 1 OS=Rattus norvegicus OX=10116 | JBrowse |
| Acropora intermedia | aint_s0070.g70.t1 | XP_044180218.1 | LOW QUALITY PROTEIN: retinoblastoma-associated protein-like [Acropora millepora] | – | JBrowse |
