Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 35 gene–annotation pairs matching PF01872 across 148 genomes · 11 ms.

Species with hits:Hydra oligactis 8Cassiopea xamachana 4Turritopsis dohrnii 3Turritopsis rubra 2Eunicella verrucosa 2Hydractinia symbiolongicarpus 2Montipora grisea 2Nematostella vectensis 1Sanderia malayensis 1Rhopilema esculentum 1Plumapathes pennacea 1Aurelia aurita 1Nemopilema nomurai 1Mastigias papua 1Aurelia aurita complex sp. Pacific 1Eunicella cavolini 1Catostylus mosaicus 1Aurelia sp. 4 Dawson et al 2005 1Hydra viridissima 1
SpeciesGene IDPfam termMatchSourceBrowser
Aurelia auritascaffold339.g12.t1PF01872RibD C-terminal domainInterproscanJBrowse
Aurelia aurita complex sp. Pacificscaffold1750.g5.t1PF01872RibD C-terminal domainInterproscanJBrowse
Aurelia sp. 4 Dawson et al 20054_ENSDKXP00000027892.1PF01872RibD C-terminal domainInterproscanJBrowse
Catostylus mosaicusENSSJYP00000009582.1PF01872RibD C-terminal domainInterproscanJBrowse
Cassiopea xamachanaCxam_g6042.t1PF01872RibD C-terminal domainInterproscanJBrowse
Cassiopea xamachanaCxam_g13813.t1PF01872RibD C-terminal domainInterproscanJBrowse
Cassiopea xamachanaCxam_g20367.t1PF01872RibD C-terminal domainInterproscanJBrowse
Cassiopea xamachanaCxam_g12486.t1PF01872RibD C-terminal domainInterproscanJBrowse
Eunicella cavoliniENSLDHP00000033128.1PF01872RibD C-terminal domainInterproscanJBrowse
Eunicella verrucosaENSNOVP00005022903.1PF01872RibD C-terminal domainInterproscanJBrowse
Eunicella verrucosaENSNOVP00005022891.1PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00001.G52294PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI01928.G28140PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00002.G21209PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00655.G56755PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI01423.G1452PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00655.G56756PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00002.G21155PF01872RibD C-terminal domainInterproscanJBrowse
Hydra oligactisHOLI00002.G20644PF01872RibD C-terminal domainInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02512_t1PF01872RibD C-terminal domainInterproscanJBrowse
Hydractinia symbiolongicarpusHSymV2.0_g02.02659_t1PF01872RibD C-terminal domainInterproscanJBrowse
Hydra viridissimaBRAKERKREP00000022512.1PF01872RibD C-terminal domainInterproscanJBrowse
Montipora griseaANN22161-RAPF01872RibD C-terminal domainInterproscanJBrowse
Montipora griseaANN41771-RAPF01872RibD C-terminal domainInterproscanJBrowse
Mastigias papuaBRAKERKYLP00000025774.1PF01872RibD C-terminal domainInterproscanJBrowse
Nemopilema nomuraiBRAKERMNPP00000000871.1PF01872RibD C-terminal domainInterproscanJBrowse
Nematostella vectensisXP_048576053.1PF01872RibD C-terminal domainInterproscanJBrowse
Plumapathes pennaceaENSDKPP00000017288.1PF01872RibD C-terminal domainInterproscanJBrowse
Rhopilema esculentumXP_065066087.1PF01872RibD C-terminal domainInterproscanJBrowse
Sanderia malayensisENSXQXP00000014805.1PF01872RibD C-terminal domainInterproscanJBrowse
Turritopsis dohrniiTur_r2.0_p0136.1.g1140.t1PF01872RibD C-terminal domainInterproscanJBrowse
Turritopsis dohrniiTur_r2.0_p0136.1.g1180.t1PF01872RibD C-terminal domainInterproscanJBrowse
Turritopsis dohrniiTur_r2.0_p0013.1.g57502.t1PF01872RibD C-terminal domainInterproscanJBrowse
Turritopsis rubraBRAKERIOWP00000012471.1PF01872RibD C-terminal domainInterproscanJBrowse
Turritopsis rubraBRAKERIOWP00000007199.1PF01872RibD C-terminal domainInterproscanJBrowse

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