Functional Domain Search

Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterPro Pfam KEGG pathway Gene Ontology PANTHER

Examples: IPR016024 PF12848 K13752 homeobox · matching is exact on the identifier and partial on the description.

Found 46 gene–annotation pairs matching PF03449 across 148 genomes · 8372 ms.

Species with hits:MGRIS 27 HOLIG 7 CCRUX 2 CXAMA 2 HVIRI 2 AAURI2 1 HSYMB 1 LSCAB 1 MVIRU 1 PUMBR 1 TRUBR 1

Species	Gene ID	Pfam term	Match	Source	Browser
AAURI2	scaffold10.g157.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
CCRUX	g1301.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
CCRUX	g2035.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
CXAMA	Cxam_g22704.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
CXAMA	Cxam_g4224.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00001.G49334	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00059.G26460	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00256.G40586	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00002.G22070	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00264.G3339	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00522.G17067	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HOLIG	HOLI00001.G52129	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HSYMB	HSymV2.0_g02.02757_t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HVIRI	BRAKERKREP00000022649.1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
HVIRI	BRAKERKREP00000023152.1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
LSCAB	ANN34989-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN29473-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN20783-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN30855-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN30251-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN23748-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN28851-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN26839-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN25129-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN24551-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN26338-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN38429-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN39239-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN31042-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN27796-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN32304-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN37418-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN37510-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN22362-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN29445-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN27134-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN32295-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN32530-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN28813-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN29383-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN21169-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN27276-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MGRIS	ANN37223-RA	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
MVIRU	scaffold121.g260.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
PUMBR	c1311.g002.t1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse
TRUBR	BRAKERIOWP00000011000.1	PF03449	Transcription elongation factor, N-terminal	Interproscan	JBrowse