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Support counts the member genes carrying the term. % of genes is that count over all 191 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23338 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| Pfam | PF01423 | LSM | 164 / 191 | 85.9% | 100.0% of 164 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0017070 Molecular Function | U6 snRNA binding | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0033962 Biological Process | P-body assembly | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0097526 Cellular Component | spliceosomal tri-snRNP complex | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 166 / 191 | 86.9% | 99.4% of 167 | ≥80% support |
| GO | GO:0000956 Biological Process | nuclear-transcribed mRNA catabolic process | 166 / 191 | 86.9% | 99.4% of 167 | ≥80% support |
| KEGG | K12623 | LSM4 — Spliceosome | 165 / 191 | 86.4% | 100.0% of 165 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Nemopilema nomurai | BRAKERMNPP00000011494.1 | XP_009056647.1 | hypothetical protein LOTGIDRAFT_216578 [Lottia gigantea] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Nemopilema nomurai | g9578.t1.1 | none | – | JBrowse | |
| Nanomia septata | ANN24919-RA | ENN72927.1 | hypothetical protein YQE_10494, partial [Dendroctonus ponderosae] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Nematostella vectensis | XP_001637201.1 | XP_001637201.1 | probable U6 snRNA-associated Sm-like protein LSm4 [Nematostella vectensis] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Oculina arbuscula | ENSPTBP00000013070.1 | XP_022799750.1 | probable U6 snRNA-associated Sm-like protein LSm4 [Stylophora pistillata] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Orbicella faveolata | XP_020606465.1 | XP_020606465.1 | U6 snRNA-associated Sm-like protein LSm4 [Orbicella faveolata] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Orbicella franksi | XP_081308354.1 | XP_015752715.1 | PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Acropora digitifera] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Orbicella franksi | XP_081308355.1 | PFX19839.1 | U6 snRNA-associated Sm-like protein LSm4 [Stylophora pistillata] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Orbicella franksi | XP_081308356.1 | PFX19839.1 | U6 snRNA-associated Sm-like protein LSm4 [Stylophora pistillata] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Orbicella franksi | XP_081308572.1 | CAH3115926.1 | unnamed protein product [Pocillopora meandrina] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Oculina patagonica | KAL9950845.1 | XP_022799750.1 | probable U6 snRNA-associated Sm-like protein LSm4 [Stylophora pistillata] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| OUT | Bolinopsis_microptera+XP_063678148.1 | none | – | JBrowse | |
| OUT | Corticium_candelabrum+XP_062509266.1 | none | – | JBrowse | |
| OUT | Halichondria_panicea+XP_064385980.1 | none | – | JBrowse | |
| OUT | Oscarella_lobularis+XP_065834818.1 | none | – | JBrowse | |
| OUT | Sycon_ciliatum+XP_065175288.1 | none | – | JBrowse | |
| Pocillopora acuta | Pocillopora_acuta_HIv2___RNAseq.g12385.t1 | XP_027056808.1 | probable U6 snRNA-associated Sm-like protein LSm4 [Pocillopora damicornis] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Porites australiensis | paus_s0130.g47.t1 | none | – | JBrowse | |
| Paramuricea clavata | CAB3997250.1 | CAB3997250.1 | U6 snRNA-associated Sm LSm4 [Paramuricea clavata] | Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX= | JBrowse |
| Paramuricea clavata | CAB3997251.1 | CAB3997251.1 | U6 snRNA-associated Sm LSm4 [Paramuricea clavata] | Q9QXA5 U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX= | JBrowse |
