Species Overview — Corallium rubrum

CnidoSite currently holds 5 of the 15 data types it covers for Corallium rubrum. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

✓ 184 records

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

✓ 1 record

Mass-spectrometry proteomics samples

Open Proteome →
Proteomic Analysis

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 944 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

✓ 18 records

Mitochondrial genome record and gene annotations

Open Mitogenome →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
Corallium_rubrum_jaCorRubr1.2
Assembly level
Chromosome
Assembly accession
GCA_964265095.1
Assembled by
Centro Nacional de Análisis Genómico
Year
2024

Genome statistics

Genome size
507.65 Mb
GC content
38%
Scaffolds
309
Scaffold N50
18.52 Mb
Contigs
857
Contig N50
1.63 Mb
Chromosomes
20

Annotation

BUSCO
Complete 86.4%Not complete 13.6%
Protein-coding genes
26
Proteins
34

Identifiers

WGS accession
CAXWAO01
BioProject
PRJEB80373

Reference

Reference
Correction to: Chromosome-Level Genome Assembly and Annotation of Corallium rubrum: A Mediterranean Coral Threatened by Overharvesting and Climate Change Genome Biology and Evolution [link]

Other Octocorallia species

Trachythela sp. YZ-2020Eunicella cavoliniEunicella verrucosaAntillogorgia americanaLeptogorgia sarmentosaDendronephthya giganteaMuricea muricataParamuricea clavataXenia sp. Carnegie-2017Chrysogorgia sp. JL179-B06Hemicorallium imperialeParagorgia papillataHeliopora coeruleaPteroeides griseumCallogorgia gracilisBriareum asbestinumCavernularia obesaCorallium rubrumDichotella gemmaceaErythropodium caribaeorumEunicea clavigeraEunicea knightiGorgonia ventalinaNanipora kamuraiParacalyptrophora sp. SY255-jinParamuricea biscayaPhenganax marumiPhenganax stokvisiPhenganax subtilisPteroeides caledonicumPterogorgia guadalupensisRenilla koellikeriRenilla reniformisStylatula elongataVeretillum cynomoriumVirgularia gustavianaEunicea succineaMuricea laxaSarcophyton elegans
See all Octocorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-23 00:34). If a data type is listed as unavailable for Corallium rubrum, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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