Gene Family

← Back to the gene family browser

Member genes
191
Species
129
Sequences
191
Best annotation support
87.4%

Consensus functional annotation

No term is shared by every member gene — the best-supported term below covers 87.4% of the 191 members.

Support counts the member genes carrying the term. % of genes is that count over all 191 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.

Source Term Name / description Support % of genes % annotated Consistency
PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SM167 / 19187.4%100.0%
of 167
≥80% support
PfamPF01423LSM164 / 19185.9%100.0%
of 164
≥80% support
GOGO:0000387
Biological Process
spliceosomal snRNP assembly167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0000932
Cellular Component
P-body167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0003723
Molecular Function
RNA binding167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0005688
Cellular Component
U6 snRNP167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0006396
Biological Process
RNA processing167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0017070
Molecular Function
U6 snRNA binding167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0033962
Biological Process
P-body assembly167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0097526
Cellular Component
spliceosomal tri-snRNP complex167 / 19187.4%100.0%
of 167
≥80% support
GOGO:0000398
Biological Process
mRNA splicing, via spliceosome166 / 19186.9%99.4%
of 167
≥80% support
GOGO:0000956
Biological Process
nuclear-transcribed mRNA catabolic process166 / 19186.9%99.4%
of 167
≥80% support
KEGGK12623LSM4 — Spliceosome165 / 19186.4%100.0%
of 165
≥80% support
📊 Total members in OG0007837: 191
Show: genes per page

Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.

Species Gene ID Top NCBI-NR hit
(accession)
Top NCBI-NR hit description
(source organism)
Top UniProt hit
(Swiss-Prot)
Genome browser
Plumapathes pennaceaENSDKPP00000027406.1CAB3997250.1U6 snRNA-associated Sm LSm4 [Paramuricea clavata]Q3ZBK6
U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99
JBrowse
Plumapathes pennaceaENSDKPP00000027416.1XP_020897906.1U6 snRNA-associated Sm-like protein LSm4 [Exaiptasia diaphana]Q3ZBK6
U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99
JBrowse
Porites rusENSGYQP00005009061.1noneJBrowse
Porites rusENSGYQP00005009068.1noneJBrowse
Paracondylactis sinensisg3356.t1noneJBrowse
Platygyra sinensisevm.model.contig_20676.3noneJBrowse
Platygyra sinensisevm.model.contig_21599.1noneJBrowse
Pachyseris speciosapspe_0.1.m1.45627.m1PFX19839.1U6 snRNA-associated Sm-like protein LSm4 [Stylophora pistillata]Q3ZBK6
U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99
JBrowse
Palythoa umbrosac0014.g021.t1XP_027056808.1probable U6 snRNA-associated Sm-like protein LSm4 [Pocillopora damicornis]Q3ZBK6
U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99
JBrowse
Pocillopora verrucosaXP_058961096.1noneJBrowse
Paraphelliactis xishaensis sp. nov.HK74SY85_g14902XP_027056808.1probable U6 snRNA-associated Sm-like protein LSm4 [Pocillopora damicornis]Q9QXA5
U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=
JBrowse
Rhopilema esculentumXP_065069376.1noneJBrowse
Rhodactis osculiferaENSJQFP00000009235.1noneJBrowse
Rhodactis osculiferaENSJQFP00000009246.1noneJBrowse
Rhodactis osculiferaENSJQFP00000009254.1noneJBrowse
Scolanthus callimorphusNY_Scal100_v1.21370.1noneJBrowse
Stephanocoenia interseptaENSDDJP00000007946.1noneJBrowse
Stephanocoenia interseptaENSDDJP00000007957.1noneJBrowse
Sanderia malayensisENSXQXP00000008795.1noneJBrowse
Stylophora pistillataPFX19839.1noneJBrowse
Go to page: of 10 pages
TOP