Species Overview — Pterogorgia guadalupensis

CnidoSite currently holds 3 of the 15 data types it covers for Pterogorgia guadalupensis. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

✓ 1 record

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 45 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Open Mitogenome anyway →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
jaPteGuad1.1
Assembly level
Contig
Assembly accession
GCA_976232015.1
Assembled by
WELLCOME SANGER INSTITUTE
Year
2025

Genome statistics

Genome size
316.28 Mb
GC content
36%
Scaffolds
2,699
Scaffold N50
232.5 kb
Contigs
2,699
Contig N50
232.5 kb

Annotation

BUSCO
Complete, single-copy 94.3%Complete, duplicated 2.7%Fragmented 2.0%Missing 1.0%

Identifiers

WGS accession
CDNHDZ01
BioProject
PRJEB97935

Other Octocorallia species

Trachythela sp. YZ-2020Eunicella cavoliniEunicella verrucosaAntillogorgia americanaLeptogorgia sarmentosaDendronephthya giganteaMuricea muricataParamuricea clavataXenia sp. Carnegie-2017Chrysogorgia sp. JL179-B06Hemicorallium imperialeParagorgia papillataHeliopora coeruleaPteroeides griseumCallogorgia gracilisBriareum asbestinumCavernularia obesaCorallium rubrumDichotella gemmaceaErythropodium caribaeorumEunicea clavigeraEunicea knightiGorgonia ventalinaNanipora kamuraiParacalyptrophora sp. SY255-jinParamuricea biscayaPhenganax marumiPhenganax stokvisiPhenganax subtilisPteroeides caledonicumPterogorgia guadalupensisRenilla koellikeriRenilla reniformisStylatula elongataVeretillum cynomoriumVirgularia gustavianaEunicea succineaMuricea laxaSarcophyton elegans
See all Octocorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-24 19:11). If a data type is listed as unavailable for Pterogorgia guadalupensis, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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