Species Overview — Renilla koellikeri

CnidoSite currently holds 3 of the 15 data types it covers for Renilla koellikeri. Each entry below links straight into the corresponding module already filtered to this species; the greyed-out entries have no data for it in the current release. Use the box underneath to open the same overview for any other species.

Data available for this species

Genome assembly

✓ available

Assembled genome (size, level, N50, BUSCO)

Open Genome →
Full assembly record · BUSCO · TFs / Ubs · Pan-geneset

Gene annotation

— not available

Predicted gene models with CDS / transcript / protein sequences

Open Gene models anyway →

Functional annotation

— not available

InterPro, Pfam, PANTHER, GO and KEGG assignments

Open Function anyway →

Gene family (orthogroup)

— not available

OrthoFinder orthogroups and TF / ubiquitin families

Open Gene family anyway →

Bulk transcriptome

✓ 2 records

RNA-seq samples with expression values (TPM)

Open Transcriptome →
Dynamic Expression View

Co-expression network

— not available

Positive / negative co-expression edges

Open Co-expression anyway →

Single-cell

— not available

scRNA-seq datasets, cell atlas and marker genes

Open Single-cell anyway →

Proteome

— not available

Mass-spectrometry proteomics samples

Open Proteome anyway →

Epigenome

— not available

DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq

Open Epigenome anyway →

Metagenome

— not available

Host-associated metagenomic samples

Open Metagenome anyway →

Phenotype

✓ 38 records

Trait measurements with geo-referencing

Open Phenotype →

Paleobiology

— not available

Fossil occurrences and stratigraphic records

Open Paleobiology anyway →

Mitogenome

— not available

Mitochondrial genome record and gene annotations

Open Mitogenome anyway →

Transposable elements

— not available

Repeat annotation of assembled genomes

Open TE anyway →

Genome browser

— not available

Interactive JBrowse track for the assembly

Open JBrowse anyway →

Assembly record

Assembly

Assembly name
ASM4404854v1
Assembly level
Contig
Assembly accession
GCA_044048545.1
Assembled by
UCSD
Year
2024

Genome statistics

Genome size
215.11 Mb
GC content
38%
Scaffolds
497
Scaffold N50
5.03 Mb
Contigs
497
Contig N50
5.03 Mb

Annotation

BUSCO
Complete 86.9%Not complete 13.1%

Identifiers

WGS accession
JBBYAC01
BioProject
PRJNA1092117

Reference

Reference
A widespread metabolic gene cluster family in metazoans Nature Chemical Biology [link]

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See all Octocorallia species in the coverage matrix →

Availability shown here is recomputed from the live database every hour (last built 2026-09-24 19:11). If a data type is listed as unavailable for Renilla koellikeri, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.

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