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Support counts the member genes carrying the term. % of genes is that count over all 212 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23188 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG | 183 / 212 | 86.3% | 100.0% of 183 | ≥80% support |
| Pfam | PF03985 | Paf1 | 185 / 212 | 87.3% | 100.0% of 185 | ≥80% support |
| GO | GO:0006368 Biological Process | transcription elongation by RNA polymerase II | 185 / 212 | 87.3% | 100.0% of 185 | ≥80% support |
| GO | GO:0016593 Cellular Component | Cdc73/Paf1 complex | 185 / 212 | 87.3% | 100.0% of 185 | ≥80% support |
| GO | GO:0000993 Molecular Function | RNA polymerase II complex binding | 183 / 212 | 86.3% | 98.9% of 185 | ≥80% support |
| GO | GO:0003682 Molecular Function | chromatin binding | 183 / 212 | 86.3% | 98.9% of 185 | ≥80% support |
| KEGG | K15174 | PAF1 — Transcription machinery | 156 / 212 | 73.6% | 99.4% of 157 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0065.g103.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Alatina alata | Aala_g2110.t1 | XP_029649706.2 | THAP domain-containing protein 5-like [Octopus sinensis] | Q9H0W7 THAP domain-containing protein 2 OS=Homo sapiens OX=9606 GN= | JBrowse |
| Aurelia aurita | scaffold231.g12.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold979.g5.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold979.g6.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold979.g6.t2 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold979.g6.t3 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000015900.1 | XP_015776857.1 | PREDICTED: RNA polymerase II-associated factor 1 homolog [Acropora digitifera] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
| Acropora austera | ENSKKQP00000015915.1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
| Acropora austera | ENSKKQP00000015922.1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
| Acropora austera | ENSKKQP00000015932.1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Acropora awi | aawi_s0016.g79.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Acropora cervicornis | KAK2567676.1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Acropora cytherea | acyt_s0004.g61.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Acropora digitifera | chr14Alt.g30970.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0001.g416.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Actinia equina | EGACTEQ4350006619-PA | XP_031559895.1 | RNA polymerase II-associated factor 1 homolog [Actinia tenebrosa] | Q6P2Y1 RNA polymerase II-associated factor 1 homolog OS=Xenopus tro | JBrowse |
| Acropora florida | aflo_s0126.g26.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
| Acropora gemmifera | agem_s0032.g67.t1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
| Acropora hemprichii | Ahemp_010845-T1 | XP_029197432.2 | RNA polymerase II-associated factor 1 homolog isoform X1 [Acropora millepora] | Q4U0S5 RNA polymerase II-associated factor 1 homolog OS=Danio rerio | JBrowse |
