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This orthogroup contains 195 genes from 132 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 195 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23102 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED | 165 / 195 | 84.6% | 99.4% of 166 | ≥80% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 166 / 195 | 85.1% | 96.0% of 173 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 165 / 195 | 84.6% | 95.4% of 173 | ≥80% support |
| GO | GO:0098789 Biological Process | obsolete pre-mRNA cleavage required for polyadenylation | 165 / 195 | 84.6% | 95.4% of 173 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 156 / 195 | 80.0% | 90.2% of 173 | ≥80% support |
| Pfam | PF00098 | zf-CCHC — Zinc knuckle | 142 / 195 | 72.8% | 84.5% of 168 | ≥50% support |
| Pfam | PF00642 | zf-CCCH — Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 115 / 195 | 59.0% | 68.5% of 168 | ≥50% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 155 / 195 | 79.5% | 89.6% of 173 | ≥50% support |
| KEGG | K14404 | CPSF4, YTH1 — Messenger RNA biogenesis | 153 / 195 | 78.5% | 98.7% of 155 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Aurelia aurita | scaffold259.g6.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold315.g13.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000022403.1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O95639 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora awi | aawi_s0480.g8.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O95639 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora cervicornis | KAK2557170.1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora cytherea | acyt_s0179.g8.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora digitifera | chr13Alt.g27091.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0052.g102.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Actinia equina | EGACTEQ4350029994-PA | XP_031563354.1 | cleavage and polyadenylation specificity factor subunit 4-like [Actinia tenebrosa] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Actinia equina | EGACTEQ4350029994-PB | XP_031563354.1 | cleavage and polyadenylation specificity factor subunit 4-like [Actinia tenebrosa] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora florida | aflo_s0057.g81.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O95639 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora florida | aflo_s0057.g81.t2 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | Q9VPT8 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora gemmifera | agem_s0070.g54.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora hemprichii | Ahemp_015768-T1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O95639 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora hyacinthus | ahya_s0249.g8.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora intermedia | aint_s0101.g68.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O95639 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Actinoscyphia liui | gene09481.t1 | XP_020916454.1 | cleavage and polyadenylation specificity factor subunit 4 [Exaiptasia diaphana] | Q66KE3 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Acropora loripes | alor_g10067.t1 | XP_029213406.2 | cleavage and polyadenylation specificity factor subunit 4-like isoform X2 [Acropora millepora] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Actinia mediterranea | ENSQPTP00000014523.1 | XP_031563354.1 | cleavage and polyadenylation specificity factor subunit 4-like [Actinia tenebrosa] | O19137 Cleavage and polyadenylation specificity factor subunit 4 OS | JBrowse |
| Actinia mediterranea | ENSQPTP00000014539.1 | none | – | JBrowse |
