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Support counts the member genes carrying the term. % of genes is that count over all 167 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR31148 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C | 142 / 167 | 85.0% | 98.6% of 144 | ≥80% support |
| Pfam | PF06220 | zf-U1 — U1 zinc finger | 144 / 167 | 86.2% | 100.0% of 144 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 144 / 167 | 86.2% | 100.0% of 144 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 144 / 167 | 86.2% | 100.0% of 144 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 144 / 167 | 86.2% | 100.0% of 144 | ≥80% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 144 / 167 | 86.2% | 100.0% of 144 | ≥80% support |
| GO | GO:0000395 Biological Process | mRNA 5'-splice site recognition | 142 / 167 | 85.0% | 98.6% of 144 | ≥80% support |
| GO | GO:0030627 Molecular Function | pre-mRNA 5'-splice site binding | 142 / 167 | 85.0% | 98.6% of 144 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 133 / 167 | 79.6% | 92.4% of 144 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 133 / 167 | 79.6% | 92.4% of 144 | ≥50% support |
| KEGG | K11095 | SNRPC — Spliceosome | 120 / 167 | 71.9% | 100.0% of 120 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0045.g6.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Aurelia aurita | scaffold416.g15.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold634.g15.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold634.g16.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000026281.1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
| Acropora austera | ENSKKQP00000026292.1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora awi | aawi_s0249.g30.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora cervicornis | KAK2568271.1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora cytherea | acyt_s0014.g178.t1 | CAH3117777.1 | unnamed protein product, partial [Pocillopora meandrina] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
| Acropora digitifera | chr4Alt.g10005.t1 | none | – | JBrowse | |
| Actinia equina | EGACTEQ4350015737-PA | XP_031553468.1 | U1 small nuclear ribonucleoprotein C-like [Actinia tenebrosa] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
| Actinia equina | EGACTEQ4350033909-PA | XP_031553468.1 | U1 small nuclear ribonucleoprotein C-like [Actinia tenebrosa] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
| Acropora florida | aflo_s0247.g32.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora gemmifera | agem_s0029.g122.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora hemprichii | Ahemp_003533-T1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora hyacinthus | ahya_s0163.g27.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora intermedia | aint_s0069.g88.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Acropora loripes | alor_g464.t1 | XP_029186925.1 | U1 small nuclear ribonucleoprotein C-like [Acropora millepora] | Q8JGS0 U1 small nuclear ribonucleoprotein C OS=Danio rerio OX=7955 | JBrowse |
| Actinia mediterranea | ENSQPTP00000014329.1 | XP_031553468.1 | U1 small nuclear ribonucleoprotein C-like [Actinia tenebrosa] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
| Actinia mediterranea | ENSQPTP00000054841.1 | XP_031553468.1 | U1 small nuclear ribonucleoprotein C-like [Actinia tenebrosa] | A7SEP9 U1 small nuclear ribonucleoprotein C OS=Nematostella vectens | JBrowse |
