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Support counts the member genes carrying the term. % of genes is that count over all 167 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR43749 | RNA-SPLICING LIGASE RTCB | 155 / 167 | 92.8% | 100.0% of 155 | ≥80% support |
| Pfam | PF01139 | RtcB | 156 / 167 | 93.4% | 100.0% of 156 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 157 / 167 | 94.0% | 100.0% of 157 | ≥80% support |
| GO | GO:0008452 Molecular Function | RNA ligase activity | 157 / 167 | 94.0% | 100.0% of 157 | ≥80% support |
| GO | GO:0003909 Molecular Function | DNA ligase activity | 155 / 167 | 92.8% | 98.7% of 157 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 155 / 167 | 92.8% | 98.7% of 157 | ≥80% support |
| GO | GO:0030145 Molecular Function | manganese ion binding | 155 / 167 | 92.8% | 98.7% of 157 | ≥80% support |
| GO | GO:0042245 Biological Process | RNA repair | 155 / 167 | 92.8% | 98.7% of 157 | ≥80% support |
| KEGG | K14415 | RTCB, rtcB — Transfer RNA biogenesis | 111 / 167 | 66.5% | 99.1% of 112 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0010.g153.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Aurelia aurita complex sp. Pacific | scaffold2219.g2.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000023579.1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora awi | aawi_s0335.g12.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora cervicornis | KAK2553349.1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora cytherea | acyt_s0260.g12.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora digitifera | chr5Alt.g11827.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0071.g85.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Actinia equina | EGACTEQ4350014481-PA | XP_031550365.1 | uncharacterized protein LOC116287807 [Actinia tenebrosa] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Actinia equina | EGACTEQ4350014481-PB | XP_031550365.1 | uncharacterized protein LOC116287807 [Actinia tenebrosa] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Actinia equina | EGACTEQ4350051962-PA | XP_031550365.1 | uncharacterized protein LOC116287807 [Actinia tenebrosa] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora florida | aflo_s0295.g8.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora gemmifera | agem_s0011.g93.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora hemprichii | Ahemp_017158-T1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora hemprichii | Ahemp_021997-T1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora hyacinthus | ahya_s0047.g15.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g20160 | XP_020910220.1 | uncharacterized protein LOC110248067 [Exaiptasia diaphana] | P0DX92 RNA-splicing ligase RtcB1 OS=Escherichia coli (strain ATCC 2 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g20162 | XP_020910220.1 | uncharacterized protein LOC110248067 [Exaiptasia diaphana] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora intermedia | aint_s0383.g11.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
| Acropora loripes | alor_g3758.t1 | XP_029205500.2 | RNA-splicing ligase RtcB-like [Acropora millepora] | P46850 RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX | JBrowse |
