CnidoSite currently holds 8 of the 15 data types it covers for
Paragorgia papillata. Each entry below links straight into the corresponding
module already filtered to this species; the greyed-out entries have no data for it in the current release.
Use the box underneath to open the same overview for any other species.
Data available for this species
Genome assembly
✓ available
Assembled genome (size, level, N50, BUSCO)
Gene annotation
✓ 41,724 records
Predicted gene models with CDS / transcript / protein sequences
Functional annotation
✓ available
InterPro, Pfam, PANTHER, GO and KEGG assignments
Gene family (orthogroup)
✓ available
OrthoFinder orthogroups and TF / ubiquitin families
Bulk transcriptome
✓ 1 record
RNA-seq samples with expression values (TPM)
Co-expression network
— not available
Positive / negative co-expression edges
Single-cell
— not available
scRNA-seq datasets, cell atlas and marker genes
Proteome
— not available
Mass-spectrometry proteomics samples
Epigenome
— not available
DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq
Metagenome
— not available
Host-associated metagenomic samples
Phenotype
✓ 37 records
Trait measurements with geo-referencing
Paleobiology
— not available
Fossil occurrences and stratigraphic records
Mitogenome
✓ 18 records
Mitochondrial genome record and gene annotations
Transposable elements
— not available
Repeat annotation of assembled genomes
Genome browser
✓ available
Interactive JBrowse track for the assembly
Assembly record
Assembly
Assembly nameASM3577116v1Assembly levelContigAssembled byInstitute of Oceanology, Chinese Academy of SciencesYear2024Genome statistics
Genome size589.50 MbGC content38%Scaffolds473Scaffold N502.67 MbContigs473Contig N502.67 MbAnnotation
BUSCO
Complete, single-copy 94.8%Complete, duplicated 2.2%Fragmented 1.8%Missing 1.2%
Reference
ReferenceThe molecular basis of octocoral calcification revealed by genome and skeletal proteome analyses GigaScience [link]
Other Octocorallia species
Availability shown here is recomputed from the live database every hour
(last built 2026-09-26 07:31). If a data type is listed as unavailable for
Paragorgia papillata, it has not been generated for this species in the
current release — the
coverage matrix shows the equivalent row
alongside every other species, and the
statistics page gives the site-wide totals.
