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This orthogroup contains 213 genes from 134 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 213 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13007 | PRE-MRNA SPLICING FACTOR-RELATED | 183 / 213 | 85.9% | 98.4% of 186 | ≥80% support |
| GO | GO:0000350 Biological Process | generation of catalytic spliceosome for second transesterification step | 183 / 213 | 85.9% | 97.9% of 187 | ≥80% support |
| GO | GO:0005682 Cellular Component | U5 snRNP | 183 / 213 | 85.9% | 97.9% of 187 | ≥80% support |
| GO | GO:0008380 Biological Process | RNA splicing | 183 / 213 | 85.9% | 97.9% of 187 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 183 / 213 | 85.9% | 97.9% of 187 | ≥80% support |
| GO | GO:0071021 Cellular Component | U2-type post-spliceosomal complex | 183 / 213 | 85.9% | 97.9% of 187 | ≥80% support |
| Pfam | PF02840 | Prp18 | 170 / 213 | 79.8% | 90.4% of 188 | ≥50% support |
| Pfam | PF08799 | PRP4 | 167 / 213 | 78.4% | 88.8% of 188 | ≥50% support |
| GO | GO:0005681 Cellular Component | spliceosomal complex | 170 / 213 | 79.8% | 90.9% of 187 | ≥50% support |
| KEGG | K12817 | PRPF18, PRP18 — Spliceosome | 151 / 213 | 70.9% | 98.7% of 153 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Alatina alata | Aala_g1349.t1 | XP_042868436.1 | uncharacterized protein LOC122250840 [Penaeus japonicus] | Q8BNA6 Protocadherin Fat 3 OS=Mus musculus OX=10090 GN=Fat3 PE=1 SV | JBrowse |
| Alatina alata | Aala_g2214.t1 | KAG0433983.1 | CGG triplet repeat-binding protein 1 [Dictyocoela muelleri] | Q9R0G6 Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 | JBrowse |
| Aurelia aurita | scaffold286.g6.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000028114.1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora awi | aawi_s0107.g17.t1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q2HJ41 Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 | JBrowse |
| Acropora cervicornis | KAK2571277.1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora digitifera | chr6Alt.g14505.t1 | none | – | JBrowse | |
| Actinia equina | EGACTEQ4350027749-PA | XP_031571716.1 | pre-mRNA-splicing factor 18-like [Actinia tenebrosa] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Actinia equina | EGACTEQ4350027749-PB | XP_031571716.1 | pre-mRNA-splicing factor 18-like [Actinia tenebrosa] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Actinia equina | EGACTEQ4350027749-PC | XP_031571716.1 | pre-mRNA-splicing factor 18-like [Actinia tenebrosa] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora florida | aflo_s0354.g17.t1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora gemmifera | agem_s0139.g18.t1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora hemprichii | Ahemp_006218-T1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora hemprichii | Ahemp_023841-T1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Acropora hyacinthus | ahya_s0150.g52.t1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g31835 | XP_020909429.1 | pre-mRNA-splicing factor 18 isoform X2 [Exaiptasia diaphana] | Q2HJ41 Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 | JBrowse |
| Actinoscyphia liui | gene24655.t1 | XP_020909428.1 | pre-mRNA-splicing factor 18 isoform X1 [Exaiptasia diaphana] | Q5RE03 Pre-mRNA-splicing factor 18 OS=Pongo abelii OX=9601 GN=PRPF1 | JBrowse |
| Acropora loripes | alor_g2228.t1 | XP_015761830.1 | PREDICTED: pre-mRNA-splicing factor 18-like [Acropora digitifera] | Q6GMH0 Pre-mRNA-splicing factor 18 OS=Danio rerio OX=7955 GN=prpf18 | JBrowse |
| Actinia mediterranea | ENSQPTP00000026338.1 | XP_031571716.1 | pre-mRNA-splicing factor 18-like [Actinia tenebrosa] | Q2HJ41 Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 | JBrowse |
| Actinia mediterranea | ENSQPTP00000064481.1 | XP_031571716.1 | pre-mRNA-splicing factor 18-like [Actinia tenebrosa] | Q2HJ41 Pre-mRNA-splicing factor 18 OS=Bos taurus OX=9913 GN=PRPF18 | JBrowse |
