← Back to the gene family browser
This orthogroup contains 194 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 194 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13946 | DNA-DIRECTED RNA POLYMERASE I,II,III | 173 / 194 | 89.2% | 100.0% of 173 | ≥80% support |
| Pfam | PF13656 | RNA_pol_L_2 — RNA polymerase Rpb3/Rpb11 dimerisation domain | 173 / 194 | 89.2% | 100.0% of 173 | ≥80% support |
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 173 / 194 | 89.2% | 100.0% of 173 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 173 / 194 | 89.2% | 100.0% of 173 | ≥80% support |
| GO | GO:0046983 Molecular Function | protein dimerization activity | 173 / 194 | 89.2% | 100.0% of 173 | ≥80% support |
| GO | GO:0001055 Molecular Function | RNA polymerase II activity | 172 / 194 | 88.7% | 99.4% of 173 | ≥80% support |
| GO | GO:0005665 Cellular Component | RNA polymerase II, core complex | 172 / 194 | 88.7% | 99.4% of 173 | ≥80% support |
| GO | GO:0006366 Biological Process | transcription by RNA polymerase II | 171 / 194 | 88.1% | 98.8% of 173 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 161 / 194 | 83.0% | 93.1% of 173 | ≥80% support |
| KEGG | K03008 | RPB11, POLR2J — DNA repair and recombination proteins | 169 / 194 | 87.1% | 99.4% of 170 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0039.g32.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Aurelia aurita | scaffold125.g57.t1 | none | – | JBrowse | |
| Aurelia aurita | scaffold125.g57.t2 | none | – | JBrowse | |
| Aurelia aurita | scaffold125.g57.t3 | none | – | JBrowse | |
| Aurelia aurita | scaffold125.g57.t4 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold254.g19.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000003354.1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora awi | aawi_s1538.g1.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora cervicornis | KAK2562972.1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora cytherea | acyt_s0121.g27.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora digitifera | chr2Alt.g4474.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0104.g40.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Actinia equina | EGACTEQ4350038276-PA | XP_031569058.1 | DNA-directed RNA polymerase II subunit RPB11-a-like [Actinia tenebrosa] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora florida | aflo_s0020.g50.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora florida | aflo_s0020.g50.t2 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora gemmifera | agem_s0064.g36.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora hemprichii | Ahemp_013541-T1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora hyacinthus | ahya_s0039.g87.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g3330 | XP_020916150.1 | DNA-directed RNA polymerase II subunit RPB11-a [Exaiptasia diaphana] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
| Acropora intermedia | aint_s0038.g35.t1 | XP_015754018.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like [Acropora digitifera] | Q32P79 DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus O | JBrowse |
