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Support counts the member genes carrying the term. % of genes is that count over all 191 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23338 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| Pfam | PF01423 | LSM | 164 / 191 | 85.9% | 100.0% of 164 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0005688 Cellular Component | U6 snRNP | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0017070 Molecular Function | U6 snRNA binding | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0033962 Biological Process | P-body assembly | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0097526 Cellular Component | spliceosomal tri-snRNP complex | 167 / 191 | 87.4% | 100.0% of 167 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 166 / 191 | 86.9% | 99.4% of 167 | ≥80% support |
| GO | GO:0000956 Biological Process | nuclear-transcribed mRNA catabolic process | 166 / 191 | 86.9% | 99.4% of 167 | ≥80% support |
| KEGG | K12623 | LSM4 — Spliceosome | 165 / 191 | 86.4% | 100.0% of 165 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0307.g27.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Aurelia aurita | scaffold34.g73.t1 | none | – | JBrowse | |
| Aurelia aurita | scaffold34.g73.t2 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold7385.g1.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000011362.1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora awi | aawi_s0006.g256.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora cervicornis | KAK2555039.1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora digitifera | chr7Alt.g14566.t1 | none | – | JBrowse | |
| Actinia equina | EGACTEQ4350014244-PA | XP_031555015.1 | U6 snRNA-associated Sm-like protein LSm4 [Actinia tenebrosa] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Actinia equina | EGACTEQ4350025868-PA | XP_031555015.1 | U6 snRNA-associated Sm-like protein LSm4 [Actinia tenebrosa] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Actinia equina | EGACTEQ4350025868-PB | XP_031555015.1 | U6 snRNA-associated Sm-like protein LSm4 [Actinia tenebrosa] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora florida | aflo_s0001.g92.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora gemmifera | agem_s0062.g27.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora hemprichii | Ahemp_016582-T1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora hyacinthus | ahya_s1797.g1.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g21228 | XP_031555015.1 | U6 snRNA-associated Sm-like protein LSm4 [Actinia tenebrosa] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora intermedia | aint_s0316.g25.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Acropora loripes | alor_g10620.t1 | XP_029184842.1 | U6 snRNA-associated Sm-like protein LSm4 [Acropora millepora] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
| Actinia mediterranea | ENSQPTP00000010573.1 | none | – | JBrowse | |
| Actinia mediterranea | ENSQPTP00000010584.1 | XP_031555015.1 | U6 snRNA-associated Sm-like protein LSm4 [Actinia tenebrosa] | Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus OX=99 | JBrowse |
