Which species have which data? The matrix below covers all 325 cnidarian species in CnidoSite × 15 data types. A green cell links straight to that module with the species already selected; a blank cell means the data type is genuinely not available for that species in this release. Click a species name to open its species portal, which lists every resource it has on one page.
Showing 31 species having Bulk transcriptome (2026-09-16)
| Species | # | Genome | Gene models | Function | Gene family | RNA-seq | Co-expr. | Single-cell | Proteome | Epigenome | Metagenome | Phenotype | Paleo | Mitogenome | TE | JBrowse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HVULG Hydra vulgaris Hydrozoa | 12 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | ✓ |
| AMILL Acropora millepora Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| APALM Acropora palmata Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | ✓ | · | ✓ |
| NVECT Nematostella vectensis Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ |
| OFAVE Orbicella faveolata Hexacorallia | 11 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| ADIGI Acropora digitifera Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| AHYAC Acropora hyacinthus Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | ✓ | · | ✓ |
| AMURI Acropora muricata Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | ✓ | · | ✓ |
| AAURI1 Aurelia aurita Scyphozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | ✓ | · | ✓ | · | ✓ |
| ACOER Aurelia coerulea Scyphozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | ✓ |
| CHEMI Clytia hemisphaerica Hydrozoa | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | ✓ |
| EDIAP Exaiptasia diaphana Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | ✓ | · | · | · | ✓ | · | ✓ |
| GFASC Galaxea fascicularis Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | ✓ | · | ✓ |
| MCAPI Montipora capitata Hexacorallia | 10 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | ✓ | · | ✓ | · | · | ✓ |
| ASELA Acropora selago Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | ✓ | · | · | ✓ | · | · | ✓ |
| ATENU Acropora tenuis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| ATENE Actinia tenebrosa Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | ✓ | · | ✓ |
| EVERR Eunicella verrucosa Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| FANCO Fimbriaphyllia ancora Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | ✓ | · | ✓ |
| HCOER Heliopora coerulea Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| HSYMB Hydractinia symbiolongicarpus Hydrozoa | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | ✓ |
| MCAPR Montipora capricornis Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| MFOLI Montipora foliosa Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | · | ✓ |
| PCLAV Paramuricea clavata Octocorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | ✓ | · | ✓ | · | ✓ |
| SSIDE Siderastrea siderea Hexacorallia | 9 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | ✓ | · | ✓ | · | · | ✓ |
| AGEMM Acropora gemmifera Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | ✓ | · | · | ✓ |
| TSTEP Telmatactis stephensoni Hexacorallia | 8 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | ✓ | · | · | · | · | · | · | ✓ |
| APOCU Astrangia poculata Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| AAURI2 Aurelia aurita complex sp. Pacific Scyphozoa | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| HVIRI Hydra viridissima Hydrozoa | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
| LPERT Lophelia pertusa Hexacorallia | 7 | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ | · | · | · | · | · | · | · | · | ✓ |
Legend: ✓ = data available (click to open the module for that species) ·
· = not available in this release. The numbers behind this matrix are rebuilt from the
live database every hour; the same table is available as
tab-separated text
for scripted access.
Reading the first two columns. Genome assembly is set when the species has an assembly
record (size, scaffold/contig N50, BUSCO, accession) — all 325 species have one.
Gene models is set only when this database also carries the predicted gene set for that
assembly, which is true for 145 species. A row whose count (#) is 1
therefore means “the assembly is catalogued here, but it has not been annotated in CnidoSite”,
not “data are missing by mistake”.
