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This orthogroup contains 214 genes from 136 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 214 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23328 | UNCHARACTERIZED | 167 / 214 | 78.0% | 99.4% of 168 | ≥50% support |
| Pfam | PF00097 | zf-C3HC4 — Zinc finger, C3HC4 type (RING finger) | 132 / 214 | 61.7% | 89.8% of 147 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 168 / 214 | 78.5% | 100.0% of 168 | ≥50% support |
| GO | GO:0004842 Molecular Function | ubiquitin-protein transferase activity | 167 / 214 | 78.0% | 99.4% of 168 | ≥50% support |
| GO | GO:0006302 Biological Process | double-strand break repair | 167 / 214 | 78.0% | 99.4% of 168 | ≥50% support |
| GO | GO:0031491 Molecular Function | nucleosome binding | 167 / 214 | 78.0% | 99.4% of 168 | ≥50% support |
| GO | GO:0035861 Cellular Component | site of double-strand break | 167 / 214 | 78.0% | 99.4% of 168 | ≥50% support |
| GO | GO:0046872 Molecular Function | metal ion binding | 132 / 214 | 61.7% | 78.6% of 168 | ≥50% support |
| KEGG | K20779 | RNF168 — DNA repair and recombination proteins | 116 / 214 | 54.2% | 98.3% of 118 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0092.g14.t1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Aurelia aurita | scaffold71.g22.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold522.g2.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000038320.1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | – | JBrowse |
| Acropora austera | ENSKKQP00000038332.1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora austera | ENSKKQP00000038339.1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora awi | aawi_s0073.g34.t1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | – | JBrowse |
| Acropora cervicornis | KAK2566627.1 | XP_015753430.1 | PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Acropora digitifera] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora cytherea | acyt_s0180.g29.t1 | XP_015753430.1 | PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Acropora digitifera] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora digitifera | chr1Alt.g631.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0087.g4.t1 | XP_015753430.1 | PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Acropora digitifera] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Actinia equina | EGACTEQ4350050483-PA | XP_031552802.1 | E3 ubiquitin-protein ligase rnf168-like [Actinia tenebrosa] | Q6INS5 E3 ubiquitin-protein ligase rnf168 OS=Xenopus laevis OX=8355 | JBrowse |
| Acropora florida | aflo_s0229.g5.t1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora gemmifera | agem_s0151.g3.t1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora gemmifera | agem_s0151.g3.t2 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora hemprichii | Ahemp_009944-T1 | XP_015753430.1 | PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Acropora digitifera] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Acropora hyacinthus | ahya_s0191.g2.t1 | XP_015753430.1 | PREDICTED: E3 ubiquitin-protein ligase RNF168-like [Acropora digitifera] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g10171 | XP_020902403.1 | E3 ubiquitin-protein ligase RNF168-like, partial [Exaiptasia diaphana] | Q6INS5 E3 ubiquitin-protein ligase rnf168 OS=Xenopus laevis OX=8355 | JBrowse |
| Acropora intermedia | aint_s0359.g12.t1 | XP_029213933.2 | E3 ubiquitin-protein ligase rnf168-like [Acropora millepora] | B2RYR0 E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus OX=1 | JBrowse |
| Actinoscyphia liui | gene15887.t1 | XP_020902403.1 | E3 ubiquitin-protein ligase RNF168-like, partial [Exaiptasia diaphana] | Q7T308 E3 ubiquitin-protein ligase rnf168 OS=Danio rerio OX=7955 GN | JBrowse |
