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This orthogroup contains 185 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 185 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19965 | RNA AND EXPORT FACTOR BINDING PROTEIN | 153 / 185 | 82.7% | 99.4% of 154 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 155 / 185 | 83.8% | 99.4% of 156 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 159 / 185 | 86.0% | 99.4% of 160 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 155 / 185 | 83.8% | 96.9% of 160 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 154 / 185 | 83.2% | 96.3% of 160 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 153 / 185 | 82.7% | 95.6% of 160 | ≥80% support |
| GO | GO:0006406 Biological Process | mRNA export from nucleus | 153 / 185 | 82.7% | 95.6% of 160 | ≥80% support |
| GO | GO:0016607 Cellular Component | nuclear speck | 144 / 185 | 77.8% | 90.0% of 160 | ≥50% support |
| GO | GO:0016973 Biological Process | poly(A)+ mRNA export from nucleus | 144 / 185 | 77.8% | 90.0% of 160 | ≥50% support |
| KEGG | K22414 | POLDIP3 — Messenger RNA biogenesis | 98 / 185 | 53.0% | 98.0% of 100 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0010.g100.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Alatina alata | Aala_g1888.t1 | PFX17634.1 | Lipoxygenase-likey domain-containing protein 1 [Stylophora pistillata] | Q8IVV2 Lipoxygenase homology domain-containing protein 1 OS=Homo sa | JBrowse |
| Alatina alata | Aala_g428.t1 | XP_020627682.1 | influenza virus NS1A-binding protein homolog [Orbicella faveolata] | Q7ZVQ8 Influenza virus NS1A-binding protein homolog B OS=Danio reri | JBrowse |
| Aurelia aurita complex sp. Pacific | scaffold390.g11.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000023215.1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora awi | aawi_s0011.g23.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora cervicornis | KAK2553394.1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora cytherea | acyt_s0012.g153.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora digitifera | chr5Alt.g11901.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0071.g42.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Actinia equina | EGACTEQ4350036430-PA | XP_031569897.1 | polymerase delta-interacting protein 3-like [Actinia tenebrosa] | – | JBrowse |
| Actinia equina | EGACTEQ4350042945-PA | XP_031569897.1 | polymerase delta-interacting protein 3-like [Actinia tenebrosa] | Q9BY77 Polymerase delta-interacting protein 3 OS=Homo sapiens OX=96 | JBrowse |
| Acropora florida | aflo_s1453.g2.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora gemmifera | agem_s0011.g44.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora hemprichii | Ahemp_017119-T1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | – | JBrowse |
| Acropora hyacinthus | ahya_s0047.g64.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g20695 | XP_020917501.1 | polymerase delta-interacting protein 3 [Exaiptasia diaphana] | Q9BY77 Polymerase delta-interacting protein 3 OS=Homo sapiens OX=96 | JBrowse |
| Acropora intermedia | aint_s0080.g38.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | – | JBrowse |
| Actinoscyphia liui | gene05996.t1 | XP_020917501.1 | polymerase delta-interacting protein 3 [Exaiptasia diaphana] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
| Acropora loripes | alor_g8383.t1 | XP_029199024.2 | translation initiation factor IF-2-like [Acropora millepora] | Q8BG81 Polymerase delta-interacting protein 3 OS=Mus musculus OX=10 | JBrowse |
