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This orthogroup contains 181 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 181 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR10927 | RIBOSOME MATURATION PROTEIN SBDS | 163 / 181 | 90.1% | 100.0% of 163 | ≥80% support |
| Pfam | PF09377 | SBDS_domain_II — SBDS protein, domain II | 159 / 181 | 87.9% | 97.6% of 163 | ≥80% support |
| Pfam | PF20268 | SBDS_C — SBDS protein, C-terminal domain | 150 / 181 | 82.9% | 92.0% of 163 | ≥80% support |
| Pfam | PF01172 | SBDS | 147 / 181 | 81.2% | 90.2% of 163 | ≥80% support |
| GO | GO:0042254 Biological Process | ribosome biogenesis | 159 / 181 | 87.9% | 99.4% of 160 | ≥80% support |
| GO | GO:0042256 Biological Process | cytosolic ribosome assembly | 144 / 181 | 79.6% | 90.0% of 160 | ≥50% support |
| KEGG | K14574 | SDO1, SBDS — Ribosome biogenesis | 139 / 181 | 76.8% | 99.3% of 140 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0001.g227.t1 | XP_015754950.1 | PREDICTED: ribosome maturation protein SBDS-like [Acropora digitifera] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Aurelia aurita | scaffold63.g64.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold1335.g2.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold1335.g2.t2 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000048410.1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora awi | aawi_s0185.g45.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora cervicornis | KAK2549727.1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora cytherea | acyt_s0160.g44.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora digitifera | chr9Alt.g18904.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0142.g27.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Actinia equina | EGACTEQ4350005290-PA | XP_031558266.1 | ribosome maturation protein SBDS-like [Actinia tenebrosa] | A5D8M6 Ribosome maturation protein SBDS OS=Xenopus laevis OX=8355 G | JBrowse |
| Actinia equina | EGACTEQ4350031913-PA | XP_031558266.1 | ribosome maturation protein SBDS-like [Actinia tenebrosa] | A5D8M6 Ribosome maturation protein SBDS OS=Xenopus laevis OX=8355 G | JBrowse |
| Acropora florida | aflo_s0152.g43.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora gemmifera | agem_s0055.g51.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora hemprichii | Ahemp_017902-T1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Acropora hyacinthus | ahya_s0001.g104.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g5513 | XP_020914822.1 | ribosome maturation protein SBDS-like [Exaiptasia diaphana] | A5D8M6 Ribosome maturation protein SBDS OS=Xenopus laevis OX=8355 G | JBrowse |
| Acropora intermedia | aint_s0169.g42.t1 | XP_029212567.1 | ribosome maturation protein SBDS-like [Acropora millepora] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
| Actinoscyphia liui | gene07642.t1 | XP_020914822.1 | ribosome maturation protein SBDS-like [Exaiptasia diaphana] | Q6DIT8 Ribosome maturation protein SBDS OS=Xenopus tropicalis OX=83 | JBrowse |
| Acropora loripes | alor_g11160.t1 | XP_015754950.1 | PREDICTED: ribosome maturation protein SBDS-like [Acropora digitifera] | Q5ZIY4 Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN | JBrowse |
