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This orthogroup contains 181 genes from 134 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 181 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12709 | DNA-DIRECTED RNA POLYMERASE II, III | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| Pfam | PF00575 | S1 | 153 / 181 | 84.5% | 96.8% of 158 | ≥80% support |
| Pfam | PF03876 | SHS2_Rpb7-N — SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | 152 / 181 | 84.0% | 96.2% of 158 | ≥80% support |
| GO | GO:0000291 Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0003697 Molecular Function | single-stranded DNA binding | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0003727 Molecular Function | single-stranded RNA binding | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0005665 Cellular Component | RNA polymerase II, core complex | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0031369 Molecular Function | translation initiation factor binding | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0045948 Biological Process | positive regulation of translational initiation | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0060213 Biological Process | positive regulation of nuclear-transcribed mRNA poly(A) tail shortening | 155 / 181 | 85.6% | 97.5% of 159 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 153 / 181 | 84.5% | 96.2% of 159 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 152 / 181 | 84.0% | 95.6% of 159 | ≥80% support |
| KEGG | K03015 | RPB7, POLR2G — DNA repair and recombination proteins | 154 / 181 | 85.1% | 98.7% of 156 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0058.g46.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Aurelia aurita | scaffold488.g13.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold1395.g3.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000010535.1 | PFX34851.1 | DNA-directed RNA polymerase II subunit RPB7 [Stylophora pistillata] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora austera | ENSKKQP00000010547.1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora awi | aawi_s0016.g47.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora cervicornis | KAK2567508.1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora cytherea | acyt_s0004.g27.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora digitifera | chr14Alt.g30933.t1 | none | – | JBrowse | |
| Actinia equina | EGACTEQ4350027322-PA | XP_031569267.1 | DNA-directed RNA polymerase II subunit RPB7 [Actinia tenebrosa] | Q7ZW41 DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio O | JBrowse |
| Acropora florida | aflo_s0126.g60.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora gemmifera | agem_s0032.g36.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora hemprichii | Ahemp_010880-T1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g15827 | XP_031569261.1 | monocarboxylate transporter 10-like [Actinia tenebrosa] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora intermedia | aint_s0003.g22.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Actinoscyphia liui | gene19656.t1 | XP_031569267.1 | DNA-directed RNA polymerase II subunit RPB7 [Actinia tenebrosa] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora loripes | alor_g23133.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Actinia mediterranea | ENSQPTP00000035436.1 | XP_031569267.1 | DNA-directed RNA polymerase II subunit RPB7 [Actinia tenebrosa] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Actinia mediterranea | ENSQPTP00000074267.1 | XP_031569267.1 | DNA-directed RNA polymerase II subunit RPB7 [Actinia tenebrosa] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
| Acropora microphthalma | amic_s0070.g65.t1 | XP_015758898.1 | PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Acropora digitifera] | Q5E9B8 DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX | JBrowse |
