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This orthogroup contains 178 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 178 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12777 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| Pfam | PF01423 | LSM | 161 / 178 | 90.5% | 100.0% of 161 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0005682 Cellular Component | U5 snRNP | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0008380 Biological Process | RNA splicing | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0030532 Cellular Component | small nuclear ribonucleoprotein complex | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0034715 Cellular Component | pICln-Sm protein complex | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 163 / 178 | 91.6% | 100.0% of 163 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 161 / 178 | 90.5% | 98.8% of 163 | ≥80% support |
| KEGG | K11096 | SNRPD2, SMD2 — DNA replication proteins | 165 / 178 | 92.7% | 100.0% of 165 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0037.g24.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Aurelia aurita | scaffold539.g11.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold1504.g1.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000010788.1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora austera | ENSKKQP00000010797.1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora awi | aawi_s0104.g20.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora cervicornis | KAK2561034.1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora cytherea | acyt_s0026.g39.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora digitifera | chr14Alt.g29192.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0002.g588.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Actinia equina | EGACTEQ4350038291-PA | XP_031551053.1 | small nuclear ribonucleoprotein Sm D2 [Actinia tenebrosa] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora florida | aflo_s0562.g8.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora gemmifera | agem_s0016.g104.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora hemprichii | Ahemp_005007-T1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora hyacinthus | ahya_s0113.g133.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g13941 | XP_031551053.1 | small nuclear ribonucleoprotein Sm D2 [Actinia tenebrosa] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora intermedia | aint_s0571.g2.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Actinoscyphia liui | gene19402.t1 | XP_020909295.1 | small nuclear ribonucleoprotein Sm D2 [Exaiptasia diaphana] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Acropora loripes | alor_g302.t1 | XP_015758366.1 | PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
| Actinia mediterranea | ENSQPTP00000035779.1 | XP_031551053.1 | small nuclear ribonucleoprotein Sm D2 [Actinia tenebrosa] | Q3SZF8 Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 | JBrowse |
