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This orthogroup contains 175 genes from 135 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 175 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23338 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| Pfam | PF01423 | LSM | 154 / 175 | 88.0% | 100.0% of 154 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0097526 Cellular Component | spliceosomal tri-snRNP complex | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0034719 Cellular Component | SMN-Sm protein complex | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0034715 Cellular Component | pICln-Sm protein complex | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0000243 Cellular Component | commitment complex | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005689 Cellular Component | U12-type spliceosomal complex | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005687 Cellular Component | U4 snRNP | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005682 Cellular Component | U5 snRNP | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0000387 Biological Process | spliceosomal snRNP assembly | 156 / 175 | 89.1% | 100.0% of 156 | ≥80% support |
| GO | GO:0005681 Cellular Component | spliceosomal complex | 153 / 175 | 87.4% | 98.1% of 156 | ≥80% support |
| KEGG | K11088 | SNRPD3, SMD3 — DNA replication proteins | 147 / 175 | 84.0% | 100.0% of 147 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora acuminata | aacu_s0153.g37.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Aurelia aurita | scaffold212.g14.t1 | none | – | JBrowse | |
| Aurelia aurita complex sp. Pacific | scaffold4550.g1.t1 | none | – | JBrowse | |
| Acropora austera | ENSKKQP00000047921.1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora austera | ENSKKQP00000047926.1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora awi | aawi_s0053.g101.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora cervicornis | KAK2573931.1 | CAH3103394.1 | unnamed protein product, partial [Porites lobata] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora cytherea | acyt_s0149.g38.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora digitifera | chr9Alt.g18971.t1 | none | – | JBrowse | |
| Acropora echinata | aech_s0011.g38.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Actinia equina | EGACTEQ4350025634-PA | XP_031573233.1 | small nuclear ribonucleoprotein Sm D3-like [Actinia tenebrosa] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Actinia equina | EGACTEQ4350042552-PA | XP_031573233.1 | small nuclear ribonucleoprotein Sm D3-like [Actinia tenebrosa] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora florida | aflo_s0100.g173.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora gemmifera | agem_s0002.g432.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora hemprichii | Ahemp_018231-T1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Acropora hyacinthus | ahya_s0001.g169.t1 | XP_015757449.1 | PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Acropora digitifera] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Alvinactis idsseensis sp. Nov. | alvinactis_v1_g6794 | XP_020905793.1 | small nuclear ribonucleoprotein Sm D3 [Exaiptasia diaphana] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Actinoscyphia liui | gene06385.t1 | XP_020905793.1 | small nuclear ribonucleoprotein Sm D3 [Exaiptasia diaphana] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Actinia mediterranea | ENSQPTP00000031286.1 | XP_031573233.1 | small nuclear ribonucleoprotein Sm D3-like [Actinia tenebrosa] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
| Actinia mediterranea | ENSQPTP00000070552.1 | XP_031573233.1 | small nuclear ribonucleoprotein Sm D3-like [Actinia tenebrosa] | O44437 Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanoga | JBrowse |
